Main schema emdb.xsd
Element emdEntry
Namespace
No namespace
Diagram
Type
entryType
Properties
Model
Children
admin , deposition , experiment , map , processing , sample , supplement
Instance
<emdEntry accessCode= "" version= "1.9.6" >
<admin > {1,1} </admin>
<deposition > {1,1} </deposition>
<map > {1,1} </map>
<supplement > {0,1} </supplement>
<sample > {1,1} </sample>
<experiment > {1,1} </experiment>
<processing > {1,1} </processing>
</emdEntry>
Attributes
Source
<xs:element name= "emdEntry" type= "entryType" />
Namespace
No namespace
Diagram
Type
depType
Properties
content
complex
minOccurs
1
maxOccurs
1
Model
status ,
depositionDate ,
depositionSite ,
processingSite ,
headerReleaseDate ,
mapReleaseDate{0,1} ,
obsoletedDate{0,1} ,
supersededByList{0,1} ,
replaceExistingEntry{0,1} ,
obsoleteList{0,1} ,
details{0,1} ,
inFrameEMDBId{0,1} ,
title ,
authors ,
keywords{0,1} ,
fittedPDBEntryIdList{0,1} ,
primaryReference ,
secondaryReference*
Children
authors , depositionDate , depositionSite , details , fittedPDBEntryIdList , headerReleaseDate , inFrameEMDBId , keywords , mapReleaseDate , obsoleteList , obsoletedDate , primaryReference , processingSite , replaceExistingEntry , secondaryReference , status , supersededByList , title
Instance
<deposition >
<status prior= "" > {1,1} </status>
<depositionDate > {1,1} </depositionDate>
<depositionSite > {1,1} </depositionSite>
<processingSite > {1,1} </processingSite>
<headerReleaseDate > {1,1} </headerReleaseDate>
<mapReleaseDate > {0,1} </mapReleaseDate>
<obsoletedDate > {0,1} </obsoletedDate>
<supersededByList > {0,1} </supersededByList>
<replaceExistingEntry > {0,1} </replaceExistingEntry>
<obsoleteList > {0,1} </obsoleteList>
<details > {0,1} </details>
<inFrameEMDBId > {0,1} </inFrameEMDBId>
<title > {1,1} </title>
<authors > {1,1} </authors>
<keywords > {0,1} </keywords>
<fittedPDBEntryIdList > {0,1} </fittedPDBEntryIdList>
<primaryReference published= "" > {1,1} </primaryReference>
<secondaryReference published= "" > {0,unbounded} </secondaryReference>
</deposition>
Source
<xs:element name= "deposition" type= "depType" minOccurs= "1" maxOccurs= "1" />
Element
depType / headerReleaseDate
Namespace
No namespace
Diagram
Type
xs:date
Properties
Source
Element
depType / replaceExistingEntry
Element
depType / fittedPDBEntryIdList
Namespace
No namespace
Diagram
Type
jrnlArtType
Properties
Model
authors ,
articleTitle ,
journal ,
volume{0,1} ,
firstPage{0,1} ,
lastPage{0,1} ,
year{0,1} ,
externalReference*
Children
articleTitle , authors , externalReference , firstPage , journal , lastPage , volume , year
Instance
<journalArticle >
<authors > {1,1} </authors>
<articleTitle > {1,1} </articleTitle>
<journal > {1,1} </journal>
<volume > {0,1} </volume>
<firstPage > {0,1} </firstPage>
<lastPage > {0,1} </lastPage>
<year > {0,1} </year>
<externalReference type= "" > {0,unbounded} </externalReference>
</journalArticle>
Source
<xs:element name= "journalArticle" type= "jrnlArtType" />
Element
pubType / nonJournalArticle
Namespace
No namespace
Diagram
Type
nonJrnlArtType
Properties
Model
authors ,
chapterTitle{0,1} ,
book{0,1} ,
thesisTitle{0,1} ,
editor{0,1} ,
publisher{0,1} ,
publisherLocation{0,1} ,
volume{0,1} ,
firstPage{0,1} ,
lastPage{0,1} ,
year{0,1} ,
externalReference*
Children
authors , book , chapterTitle , editor , externalReference , firstPage , lastPage , publisher , publisherLocation , thesisTitle , volume , year
Instance
<nonJournalArticle >
<authors > {1,1} </authors>
<chapterTitle > {0,1} </chapterTitle>
<book > {0,1} </book>
<thesisTitle > {0,1} </thesisTitle>
<editor > {0,1} </editor>
<publisher > {0,1} </publisher>
<publisherLocation > {0,1} </publisherLocation>
<volume > {0,1} </volume>
<firstPage > {0,1} </firstPage>
<lastPage > {0,1} </lastPage>
<year > {0,1} </year>
<externalReference type= "" > {0,unbounded} </externalReference>
</nonJournalArticle>
Source
<xs:element name= "nonJournalArticle" type= "nonJrnlArtType" />
Element
depType / secondaryReference
Namespace
No namespace
Diagram
Type
mapType
Properties
content
complex
maxOccurs
1
Model
Children
annotationDetails , axisOrder , cell , contourLevel , dataType , details , dimensions , file , limit , origin , pixelSpacing , spaceGroupNumber , spacing , statistics
Instance
<map >
<file format= "CCP4" sizeKb= "" type= "map" > {1,1} </file>
<dataType > {1,1} </dataType>
<dimensions > {1,1} </dimensions>
<origin > {1,1} </origin>
<limit > {1,1} </limit>
<spacing > {1,1} </spacing>
<cell > {1,1} </cell>
<axisOrder > {1,1} </axisOrder>
<statistics > {1,1} </statistics>
<spaceGroupNumber > {1,1} </spaceGroupNumber>
<details > {1,1} </details>
<pixelSpacing > {1,1} </pixelSpacing>
<contourLevel source= "" > {0,1} </contourLevel>
<annotationDetails > {0,1} </annotationDetails>
</map>
Source
<xs:element name= "map" type= "mapType" maxOccurs= "1" />
Namespace
No namespace
Diagram
Type
cellType
Properties
Model
Children
cellA , cellAlpha , cellB , cellBeta , cellC , cellGamma
Instance
<cell >
<cellA units= "A" > {0,1} </cellA>
<cellB units= "A" > {0,1} </cellB>
<cellC units= "A" > {0,1} </cellC>
<cellAlpha units= "degrees" > {0,1} </cellAlpha>
<cellBeta units= "degrees" > {0,1} </cellBeta>
<cellGamma units= "degrees" > {0,1} </cellGamma>
</cell>
Source
<xs:element name= "cell" type= "cellType" />
Element
mapType / annotationDetails
Namespace
No namespace
Diagram
Type
mskType
Properties
content
complex
minOccurs
0
maxOccurs
unbounded
Model
Children
annotationDetails , axisOrder , cell , dataType , details , dimensions , file , limit , origin , pixelSpacing , spaceGroupNumber , spacing , statistics
Instance
<mask >
<file format= "CCP4" sizeKb= "" type= "map" > {1,1} </file>
<dataType > {1,1} </dataType>
<dimensions > {1,1} </dimensions>
<spacing > {1,1} </spacing>
<origin > {1,1} </origin>
<limit > {1,1} </limit>
<cell > {1,1} </cell>
<axisOrder > {1,1} </axisOrder>
<statistics > {0,1} </statistics>
<pixelSpacing > {1,1} </pixelSpacing>
<details > {0,1} </details>
<annotationDetails > {0,1} </annotationDetails>
<spaceGroupNumber > {0,1} </spaceGroupNumber>
</mask>
Source
<xs:element name= "mask" type= "mskType" minOccurs= "0" maxOccurs= "unbounded" />
Namespace
No namespace
Diagram
Type
cellType
Properties
Model
Children
cellA , cellAlpha , cellB , cellBeta , cellC , cellGamma
Instance
<cell >
<cellA units= "A" > {0,1} </cellA>
<cellB units= "A" > {0,1} </cellB>
<cellC units= "A" > {0,1} </cellC>
<cellAlpha units= "degrees" > {0,1} </cellAlpha>
<cellBeta units= "degrees" > {0,1} </cellBeta>
<cellGamma units= "degrees" > {0,1} </cellGamma>
</cell>
Source
<xs:element name= "cell" type= "cellType" />
Element
mskType / annotationDetails
Namespace
No namespace
Diagram
Type
slcType
Properties
content
complex
minOccurs
0
maxOccurs
unbounded
Model
Children
annotationDetails , axisOrder , cell , dataType , details , dimensions , file , limit , origin , pixelSpacing , spaceGroupNumber , spacing , statistics
Instance
<slice >
<file format= "CCP4" sizeKb= "" type= "map" > {1,1} </file>
<dataType > {1,1} </dataType>
<dimensions > {1,1} </dimensions>
<spacing > {1,1} </spacing>
<origin > {1,1} </origin>
<limit > {1,1} </limit>
<cell > {1,1} </cell>
<axisOrder > {1,1} </axisOrder>
<statistics > {1,1} </statistics>
<pixelSpacing > {1,1} </pixelSpacing>
<details > {1,1} </details>
<annotationDetails > {0,1} </annotationDetails>
<spaceGroupNumber > {1,1} </spaceGroupNumber>
</slice>
Source
<xs:element name= "slice" type= "slcType" minOccurs= "0" maxOccurs= "unbounded" />
Namespace
No namespace
Diagram
Type
slcCellType
Properties
Model
Children
cellA , cellAlpha , cellB , cellBeta , cellC , cellGamma
Instance
<cell >
<cellA units= "A" > {0,1} </cellA>
<cellB units= "A" > {0,1} </cellB>
<cellC units= "A" > {0,1} </cellC>
<cellAlpha units= "degrees" > {0,1} </cellAlpha>
<cellBeta units= "degrees" > {0,1} </cellBeta>
<cellGamma units= "degrees" > {0,1} </cellGamma>
</cell>
Source
<xs:element name= "cell" type= "slcCellType" />
Element
slcType / annotationDetails
Namespace
No namespace
Diagram
Type
samplType
Properties
content
complex
maxOccurs
1
Model
Children
compDegree , details , molWtExp , molWtMethod , molWtTheo , name , numComponents , sampleComponentList
Instance
<sample >
<numComponents > {1,1} </numComponents>
<name > {1,1} </name>
<compDegree > {0,1} </compDegree>
<molWtTheo units= "MDa" > {0,1} </molWtTheo>
<details > {0,1} </details>
<molWtMethod > {0,1} </molWtMethod>
<molWtExp units= "MDa" > {0,1} </molWtExp>
<sampleComponentList > {1,1} </sampleComponentList>
</sample>
Source
<xs:element name= "sample" type= "samplType" maxOccurs= "1" />
Namespace
No namespace
Diagram
Type
smplCompType
Properties
content
complex
maxOccurs
unbounded
Model
entry ,
sciName ,
synName{0,1} ,
molWtTheo{0,1} ,
molWtExp{0,1} ,
details{0,1} , (
protein |
cellular-component |
virus |
nucleic-acid |
ligand |
label |
ribosome-eukaryote |
ribosome-prokaryote )
Children
cellular-component , details , entry , label , ligand , molWtExp , molWtTheo , nucleic-acid , protein , ribosome-eukaryote , ribosome-prokaryote , sciName , synName , virus
Instance
<sampleComponent componentID= "" >
<entry > {1,1} </entry>
<sciName > {1,1} </sciName>
<synName > {0,1} </synName>
<molWtTheo units= "MDa" > {0,1} </molWtTheo>
<molWtExp units= "MDa" > {0,1} </molWtExp>
<details > {0,1} </details>
<protein > {1,1} </protein>
<cellular-component > {1,1} </cellular-component>
<virus > {1,1} </virus>
<nucleic-acid > {1,1} </nucleic-acid>
<ligand > {1,1} </ligand>
<label > {1,1} </label>
<ribosome-eukaryote > {1,1} </ribosome-eukaryote>
<ribosome-prokaryote > {1,1} </ribosome-prokaryote>
</sampleComponent>
Attributes
Source
<xs:element name= "sampleComponent" type= "smplCompType" maxOccurs= "unbounded" />
Namespace
No namespace
Diagram
Type
cmpntClassType
Properties
Facets
enumeration
virus
enumeration
cellular-component
enumeration
protein
enumeration
nucleic-acid
enumeration
ligand
enumeration
label
enumeration
ribosome-eukaryote
enumeration
ribosome-prokaryote
Source
<xs:element name= "entry" type= "cmpntClassType" />
Namespace
No namespace
Diagram
Type
proteinType
Properties
Model
Children
details , engSource , externalReferences , natSource , numCopies , oligomericDetails , recombinantExpFlag , sciSpeciesName , sciSpeciesStrain , synSpeciesName
Instance
<protein >
<sciSpeciesName ncbiTaxId= "" > {0,1} </sciSpeciesName>
<sciSpeciesStrain > {0,1} </sciSpeciesStrain>
<synSpeciesName > {0,1} </synSpeciesName>
<oligomericDetails > {0,1} </oligomericDetails>
<numCopies > {0,1} </numCopies>
<recombinantExpFlag > {1,1} </recombinantExpFlag>
<natSource > {0,1} </natSource>
<engSource > {0,1} </engSource>
<details > {0,1} </details>
<externalReferences > {0,1} </externalReferences>
</protein>
Source
<xs:element name= "protein" type= "proteinType" />
Namespace
No namespace
Diagram
Type
cellCompType
Properties
Model
Children
details , engSource , externalReferences , natSource , numCopies , oligomericDetails , recombinantExpFlag , sciSpeciesName , sciSpeciesStrain , synSpeciesName
Instance
<cellular-component >
<sciSpeciesName ncbiTaxId= "" > {0,1} </sciSpeciesName>
<sciSpeciesStrain > {0,1} </sciSpeciesStrain>
<synSpeciesName > {0,1} </synSpeciesName>
<oligomericDetails > {0,1} </oligomericDetails>
<numCopies > {0,1} </numCopies>
<recombinantExpFlag > {1,1} </recombinantExpFlag>
<natSource > {0,1} </natSource>
<engSource > {0,1} </engSource>
<details > {0,1} </details>
<externalReferences > {0,1} </externalReferences>
</cellular-component>
Source
<xs:element name= "cellular-component" type= "cellCompType" />
Namespace
No namespace
Diagram
Type
virusType
Properties
Model
Children
class , empty , engSource , enveloped , externalReferences , isolate , natSource , sciSpeciesName , sciSpeciesSerocomplex , sciSpeciesSerotype , sciSpeciesStrain , sciSpeciesSubspecies , shell , synSpeciesName
Instance
<virus >
<sciSpeciesName ncbiTaxId= "" > {1,1} </sciSpeciesName>
<synSpeciesName > {0,1} </synSpeciesName>
<sciSpeciesSerotype > {0,1} </sciSpeciesSerotype>
<sciSpeciesSerocomplex > {0,1} </sciSpeciesSerocomplex>
<sciSpeciesSubspecies > {0,1} </sciSpeciesSubspecies>
<sciSpeciesStrain > {0,1} </sciSpeciesStrain>
<empty > {1,1} </empty>
<enveloped > {1,1} </enveloped>
<isolate > {1,1} </isolate>
<class > {1,1} </class>
<externalReferences > {0,1} </externalReferences>
<natSource > {0,1} </natSource>
<engSource > {0,1} </engSource>
<shell id= "" > {0,1} </shell>
</virus>
Source
<xs:element name= "virus" type= "virusType" />
Namespace
No namespace
Diagram
Type
virusIsolType
Properties
content
simple
minOccurs
1
maxOccurs
1
Facets
enumeration
STRAIN
enumeration
SEROTYPE
enumeration
SEROCOMPLEX
enumeration
SUBSPECIES
enumeration
SPECIES
enumeration
OTHER
Source
<xs:element name= "isolate" type= "virusIsolType" minOccurs= "1" maxOccurs= "1" />
Namespace
No namespace
Diagram
Type
virusClassType
Properties
content
simple
minOccurs
1
maxOccurs
1
Facets
enumeration
VIRION
enumeration
SATELLITE
enumeration
PRION
enumeration
VIROID
enumeration
VIRUS-LIKE PARTICLE
enumeration
OTHER
Source
<xs:element name= "class" type= "virusClassType" minOccurs= "1" maxOccurs= "1" />
Namespace
No namespace
Diagram
Type
hostCategoryType
Properties
content
simple
minOccurs
0
maxOccurs
1
Facets
enumeration
ARCHAEA
enumeration
ALGAE
enumeration
BACTERIA(EUBACTERIA)
enumeration
FUNGI
enumeration
INVERTEBRATES
enumeration
PLANTAE(HIGHER PLANTS)
enumeration
VERTEBRATES
enumeration
PROTOZOA
Source
<xs:element name= "hostCategory" type= "hostCategoryType" minOccurs= "0" maxOccurs= "1" />
Namespace
No namespace
Diagram
Type
nuclAcidType
Properties
Model
Children
class , sciSpeciesName , sciSpeciesStrain , sequence , structure , synSpeciesName , syntheticFlag
Instance
<nucleic-acid >
<sciSpeciesName ncbiTaxId= "" > {0,1} </sciSpeciesName>
<sciSpeciesStrain > {0,1} </sciSpeciesStrain>
<synSpeciesName > {0,1} </synSpeciesName>
<syntheticFlag > {1,1} </syntheticFlag>
<sequence > {0,1} </sequence>
<class > {1,1} </class>
<structure > {1,1} </structure>
</nucleic-acid>
Source
<xs:element name= "nucleic-acid" type= "nuclAcidType" />
Namespace
No namespace
Diagram
Type
naClassType
Properties
Facets
enumeration
DNA
enumeration
DNA/RNA
enumeration
PEPTIDE NUCLEIC ACID
enumeration
PEPTIDE NUCLEIC ACID/DNA
enumeration
RIBOZYME
enumeration
RNA
enumeration
T-RNA
enumeration
OTHER
Source
<xs:element name= "class" type= "naClassType" />
Namespace
No namespace
Diagram
Type
naStructType
Properties
Facets
enumeration
SINGLE STRANDED
enumeration
DOUBLE HELIX
enumeration
TRIPLE HELIX
enumeration
QUADRUPLE HELIX
enumeration
OTHER
Source
<xs:element name= "structure" type= "naStructType" />
Namespace
No namespace
Diagram
Type
ligandType
Properties
Model
Children
details , engSource , externalReferences , natSource , numCopies , oligomericDetails , recombinantExpFlag , sciSpeciesName , sciSpeciesStrain , synSpeciesName
Instance
<ligand >
<sciSpeciesName ncbiTaxId= "" > {0,1} </sciSpeciesName>
<sciSpeciesStrain > {0,1} </sciSpeciesStrain>
<synSpeciesName > {0,1} </synSpeciesName>
<oligomericDetails > {0,1} </oligomericDetails>
<numCopies > {0,1} </numCopies>
<recombinantExpFlag > {1,1} </recombinantExpFlag>
<natSource > {0,1} </natSource>
<engSource > {0,1} </engSource>
<details > {0,1} </details>
<externalReferences > {0,1} </externalReferences>
</ligand>
Source
<xs:element name= "ligand" type= "ligandType" />
Namespace
No namespace
Diagram
Type
riboTypeEu
Properties
Model
ALL(
eukaryote sciSpeciesName{0,1} sciSpeciesStrain{0,1} synSpeciesName{0,1} oligomericDetails{0,1} numCopies{0,1} recombinantExpFlag{0,1} natSource{0,1} engSource{0,1} details{0,1} externalReferences{0,1} )
Children
details , engSource , eukaryote , externalReferences , natSource , numCopies , oligomericDetails , recombinantExpFlag , sciSpeciesName , sciSpeciesStrain , synSpeciesName
Instance
<ribosome-eukaryote >
<eukaryote > {1,1} </eukaryote>
<sciSpeciesName ncbiTaxId= "" > {0,1} </sciSpeciesName>
<sciSpeciesStrain > {0,1} </sciSpeciesStrain>
<synSpeciesName > {0,1} </synSpeciesName>
<oligomericDetails > {0,1} </oligomericDetails>
<numCopies > {0,1} </numCopies>
<recombinantExpFlag > {0,1} </recombinantExpFlag>
<natSource > {0,1} </natSource>
<engSource > {0,1} </engSource>
<details > {0,1} </details>
<externalReferences > {0,1} </externalReferences>
</ribosome-eukaryote>
Source
<xs:element name= "ribosome-eukaryote" type= "riboTypeEu" />
Namespace
No namespace
Diagram
Type
riboTypePro
Properties
Model
ALL(
prokaryote sciSpeciesName{0,1} sciSpeciesStrain{0,1} synSpeciesName{0,1} oligomericDetails{0,1} numCopies{0,1} recombinantExpFlag{0,1} natSource{0,1} engSource{0,1} details{0,1} externalReferences{0,1} )
Children
details , engSource , externalReferences , natSource , numCopies , oligomericDetails , prokaryote , recombinantExpFlag , sciSpeciesName , sciSpeciesStrain , synSpeciesName
Instance
<ribosome-prokaryote >
<prokaryote > {1,1} </prokaryote>
<sciSpeciesName ncbiTaxId= "" > {0,1} </sciSpeciesName>
<sciSpeciesStrain > {0,1} </sciSpeciesStrain>
<synSpeciesName > {0,1} </synSpeciesName>
<oligomericDetails > {0,1} </oligomericDetails>
<numCopies > {0,1} </numCopies>
<recombinantExpFlag > {0,1} </recombinantExpFlag>
<natSource > {0,1} </natSource>
<engSource > {0,1} </engSource>
<details > {0,1} </details>
<externalReferences > {0,1} </externalReferences>
</ribosome-prokaryote>
Source
<xs:element name= "ribosome-prokaryote" type= "riboTypePro" />
Namespace
No namespace
Diagram
Type
vitrifType
Properties
content
complex
maxOccurs
unbounded
Model
Children
cryogenName , details , humidity , instrument , method , temperature , timeResolvedState
Instance
<vitrification >
<cryogenName > {1,1} </cryogenName>
<humidity > {0,1} </humidity>
<temperature units= "Kelvin" > {0,1} </temperature>
<instrument > {0,1} </instrument>
<method > {0,1} </method>
<timeResolvedState > {0,1} </timeResolvedState>
<details > {0,1} </details>
</vitrification>
Source
<xs:element name= "vitrification" type= "vitrifType" maxOccurs= "unbounded" />
Namespace
No namespace
Diagram
Type
cryogenType
Properties
Facets
enumeration
ETHANE
enumeration
ETHANE-PROPANE MIXTURE
enumeration
METHANE
enumeration
NITROGEN
enumeration
HELIUM
enumeration
PROPANE
enumeration
FREON 12
enumeration
FREON 22
enumeration
NONE
enumeration
OTHER
Source
<xs:element name= "cryogenName" type= "cryogenType" />
Namespace
No namespace
Diagram
Type
vitrInstrType
Properties
content
simple
minOccurs
0
Facets
enumeration
BAL-TEC HPM 010
enumeration
EMS-002 RAPID IMMERSION FREEZER
enumeration
FEI VITROBOT
enumeration
FEI VITROBOT MARK I
enumeration
FEI VITROBOT MARK II
enumeration
FEI VITROBOT MARK III
enumeration
FEI VITROBOT MARK IV
enumeration
GATAN CRYOPLUNGE 3
enumeration
HOMEMADE PLUNGER
enumeration
LEICA PLUNGER
enumeration
LEICA EM GP
enumeration
LEICA EM CPC
enumeration
LEICA EM HPM100
enumeration
LEICA EM PACT
enumeration
LEICA EM PACT2
enumeration
LEICA KF80
enumeration
NONE
enumeration
REICHERT-JUNG PLUNGER
enumeration
ZEISS PLUNGE FREEZER CRYOBOX
enumeration
OTHER
enumeration
SPOTITON
Source
<xs:element name= "instrument" type= "vitrInstrType" minOccurs= "0" />
Namespace
No namespace
Diagram
Type
imgType
Properties
content
complex
maxOccurs
unbounded
Model
ALL(
astigmatism{0,1} electronSource electronDose{0,1} energyFilter{0,1} imagingMode nominalDefocusMin{0,1} nominalDefocusMax{0,1} illuminationMode specimenHolder{0,1} details{0,1} detector{0,1} nominalCs{0,1} tiltAngleMin{0,1} calibratedMagnification{0,1} tiltAngleMax{0,1} temperature{0,1} temperatureMin{0,1} temperatureMax{0,1} microscope date{0,1} specimenHolderModel acceleratingVoltage{0,1} nominalMagnification{0,1} energyWindow{0,1} detectorDistance{0,1} electronBeamTiltParams{0,1} )
Children
acceleratingVoltage , astigmatism , calibratedMagnification , date , details , detector , detectorDistance , electronBeamTiltParams , electronDose , electronSource , energyFilter , energyWindow , illuminationMode , imagingMode , microscope , nominalCs , nominalDefocusMax , nominalDefocusMin , nominalMagnification , specimenHolder , specimenHolderModel , temperature , temperatureMax , temperatureMin , tiltAngleMax , tiltAngleMin
Instance
<imaging >
<astigmatism > {0,1} </astigmatism>
<electronSource > {1,1} </electronSource>
<electronDose units= "e/A**2" > {0,1} </electronDose>
<energyFilter > {0,1} </energyFilter>
<imagingMode > {1,1} </imagingMode>
<nominalDefocusMin units= "nm" > {0,1} </nominalDefocusMin>
<nominalDefocusMax units= "nm" > {0,1} </nominalDefocusMax>
<illuminationMode > {1,1} </illuminationMode>
<specimenHolder > {0,1} </specimenHolder>
<details > {0,1} </details>
<detector > {0,1} </detector>
<nominalCs units= "mm" > {0,1} </nominalCs>
<tiltAngleMin units= "degrees" > {0,1} </tiltAngleMin>
<calibratedMagnification > {0,1} </calibratedMagnification>
<tiltAngleMax units= "degrees" > {0,1} </tiltAngleMax>
<temperature units= "Kelvin" > {0,1} </temperature>
<temperatureMin units= "Kelvin" > {0,1} </temperatureMin>
<temperatureMax units= "Kelvin" > {0,1} </temperatureMax>
<microscope > {1,1} </microscope>
<date > {0,1} </date>
<specimenHolderModel > {1,1} </specimenHolderModel>
<acceleratingVoltage units= "kV" > {0,1} </acceleratingVoltage>
<nominalMagnification > {0,1} </nominalMagnification>
<energyWindow units= "eV" > {0,1} </energyWindow>
<detectorDistance > {0,1} </detectorDistance>
<electronBeamTiltParams > {0,1} </electronBeamTiltParams>
</imaging>
Source
<xs:element name= "imaging" type= "imgType" maxOccurs= "unbounded" />
Namespace
No namespace
Diagram
Type
eSourceType
Properties
Facets
enumeration
TUNGSTEN HAIRPIN
enumeration
LAB6
enumeration
FIELD EMISSION GUN
enumeration
OTHER
Source
<xs:element name= "electronSource" type= "eSourceType" />
Namespace
No namespace
Diagram
Type
imgModeType
Properties
Facets
enumeration
BRIGHT FIELD
enumeration
DARK FIELD
enumeration
DIFFRACTION
enumeration
OTHER
Source
<xs:element name= "imagingMode" type= "imgModeType" />
Element
imgType / nominalDefocusMin
Element
imgType / nominalDefocusMax
Namespace
No namespace
Diagram
Type
detectorType
Properties
content
simple
minOccurs
0
Facets
enumeration
AGFA SCIENTA FILM
enumeration
KODAK 4489 FILM
enumeration
KODAK SO-163 FILM
enumeration
GENERIC FILM
enumeration
GENERIC IMAGE PLATES
enumeration
DIRECT ELECTRON DE-10 (5k x 4k)
enumeration
DIRECT ELECTRON DE-12 (4k x 3k)
enumeration
DIRECT ELECTRON DE-16 (4k x 4k)
enumeration
DIRECT ELECTRON DE-20 (5k x 3k)
enumeration
DIRECT ELECTRON DE-64 (8k x 8k)
enumeration
FEI CETA (4k x 4k)
enumeration
FEI EAGLE (2k x 2k)
enumeration
FEI EAGLE (4k x 4k)
enumeration
FEI FALCON I (4k x 4k)
enumeration
FEI FALCON II (4k x 4k)
enumeration
FEI FALCON III (4k x 4k)
enumeration
GATAN MULTISCAN
enumeration
GATAN ORIUS SC200 (2k x 2k)
enumeration
GATAN ORIUS SC600 (2.7k x 2.7k)
enumeration
GATAN ORIUS SC1000 (4k x 2.7k)
enumeration
GATAN ULTRASCAN 1000 (2k x 2k)
enumeration
GATAN ULTRASCAN 4000 (4k x 4k)
enumeration
GATAN ULTRASCAN 10000 (10k x 10k)
enumeration
GATAN K2 (4k x 4k)
enumeration
GATAN K2 BASE (4k x 4k)
enumeration
GATAN K2 SUMMIT (4k x 4k)
enumeration
GATAN K2 IS (4k x 4k)
enumeration
GATAN K2 QUANTUM (4k x 4k)
enumeration
GENERIC GATAN (2k x 2k)
enumeration
GENERIC GATAN (4k x 4k)
enumeration
GENERIC GATAN
enumeration
PROSCAN TEM-PIV (2k x 2k)
enumeration
SIA 15C (3k x 3k)
enumeration
TVIPS TEMCAM-F816 (8k x 8k)
enumeration
TVIPS TEMCAM-F415 (4k x 4k)
enumeration
TVIPS TEMCAM-F416 (4k x 4k)
enumeration
TVIPS TEMCAM-F216 (2k x 2k)
enumeration
TVIPS TEMCAM-F224 (2k x 2k)
enumeration
GENERIC TVIPS (2k x 2k)
enumeration
GENERIC TVIPS (4k x 4k)
enumeration
GENERIC TVIPS
enumeration
GENERIC CCD (2k x 2k)
enumeration
GENERIC CCD (4k x 4k)
enumeration
GENERIC CCD
enumeration
OTHER
Source
<xs:element name= "detector" type= "detectorType" minOccurs= "0" />
Element
imgType / calibratedMagnification
Namespace
No namespace
Diagram
Type
microscopeType
Properties
Facets
enumeration
FEI MORGAGNI
enumeration
FEI POLARA 300
enumeration
FEI TALOS ARCTICA
enumeration
FEI TECNAI 10
enumeration
FEI TECNAI 12
enumeration
FEI TECNAI 20
enumeration
FEI TECNAI ARCTICA
enumeration
FEI TECNAI F20
enumeration
FEI TECNAI F30
enumeration
FEI TECNAI SPHERA
enumeration
FEI TECNAI SPIRIT
enumeration
FEI TITAN
enumeration
FEI TITAN KRIOS
enumeration
FEI/PHILIPS CM10
enumeration
FEI/PHILIPS CM12
enumeration
FEI/PHILIPS CM120T
enumeration
FEI/PHILIPS CM200FEG
enumeration
FEI/PHILIPS CM200FEG/SOPHIE
enumeration
FEI/PHILIPS CM200FEG/ST
enumeration
FEI/PHILIPS CM200FEG/UT
enumeration
FEI/PHILIPS CM200T
enumeration
FEI/PHILIPS CM300FEG/HE
enumeration
FEI/PHILIPS CM300FEG/ST
enumeration
FEI/PHILIPS CM300FEG/T
enumeration
FEI/PHILIPS EM400
enumeration
FEI/PHILIPS EM420
enumeration
HITACHI EF2000
enumeration
HITACHI H-9500SD
enumeration
HITACHI H3000 UHVEM
enumeration
HITACHI H7600
enumeration
HITACHI HF2000
enumeration
HITACHI HF3000
enumeration
JEOL 100CX
enumeration
JEOL 1010
enumeration
JEOL 1200
enumeration
JEOL 1200EX
enumeration
JEOL 1200EXII
enumeration
JEOL 1230
enumeration
JEOL 1400
enumeration
JEOL 2000EX
enumeration
JEOL 2000EXII
enumeration
JEOL 2010
enumeration
JEOL 2010F
enumeration
JEOL 2010HC
enumeration
JEOL 2010HT
enumeration
JEOL 2010UHR
enumeration
JEOL 2011
enumeration
JEOL 2100
enumeration
JEOL 2100F
enumeration
JEOL 2200FS
enumeration
JEOL 2200FSC
enumeration
JEOL 3000SFF
enumeration
JEOL 3100FEF
enumeration
JEOL 3100FFC
enumeration
JEOL 3200FS
enumeration
JEOL 3200FSC
enumeration
JEOL 4000
enumeration
JEOL 4000EX
enumeration
JEOL CRYO ARM 200
enumeration
JEOL CRYO ARM 300
enumeration
JEOL KYOTO-3000SFF
enumeration
TFS GLACIOS
enumeration
TFS KRIOS
enumeration
TFS TALOS
enumeration
TFS TALOS L120C
enumeration
TFS TALOS F200C
enumeration
ZEISS LEO912
enumeration
ZEISS LIBRA120PLUS
enumeration
OTHER
Source
<xs:element name= "microscope" type= "microscopeType" />
Element
imgType / specimenHolderModel
Namespace
No namespace
Diagram
Type
specimenHolderType
Properties
Facets
enumeration
FEI TITAN KRIOS AUTOGRID HOLDER
enumeration
GATAN HELIUM
enumeration
GATAN LIQUID NITROGEN
enumeration
HOME BUILD
enumeration
JEOL
enumeration
JEOL 3200FSC CRYOHOLDER
enumeration
PHILIPS ROTATION HOLDER
enumeration
SIDE ENTRY, EUCENTRIC
enumeration
JEOL CRYOSPECPORTER
enumeration
OTHER
Source
<xs:element name= "specimenHolderModel" type= "specimenHolderType" />
Element
imgType / acceleratingVoltage
Element
imgType / nominalMagnification
Element
imgType / electronBeamTiltParams
Namespace
No namespace
Diagram
Type
imgScanType
Properties
content
complex
maxOccurs
unbounded
Model
Children
URLRawData , details , numDigitalImages , odRange , quantBitNumber , samplingSize , scanner
Instance
<imageAcquisition >
<numDigitalImages > {0,1} </numDigitalImages>
<scanner > {0,1} </scanner>
<samplingSize units= "microns" > {0,1} </samplingSize>
<odRange > {0,1} </odRange>
<URLRawData > {0,1} </URLRawData>
<quantBitNumber > {0,1} </quantBitNumber>
<details > {0,1} </details>
</imageAcquisition>
Source
<xs:element name= "imageAcquisition" type= "imgScanType" maxOccurs= "unbounded" />
Namespace
No namespace
Diagram
Type
scannerType
Properties
content
simple
minOccurs
0
Facets
enumeration
n/a
enumeration
CREO EVERSMART SUPREME
enumeration
EIKONIX IEEE 488
enumeration
EMIL 10
enumeration
IMACON
enumeration
NIKON SUPER COOLSCAN 9000
enumeration
NIKON SUPER COOLSCAN 8000
enumeration
NIKON SUPER COOLSCAN 5000
enumeration
NIKON SUPER COOLSCAN 4000
enumeration
NIKON COOLSCAN
enumeration
OPTRONICS
enumeration
PATCHWORK DENSITOMETER
enumeration
PERKIN ELMER
enumeration
PRIMESCAN
enumeration
TEMSCAN
enumeration
ZEISS SCAI
enumeration
OTHER
Source
<xs:element name= "scanner" type= "scannerType" minOccurs= "0" />
Namespace
No namespace
Diagram
Type
fittingType
Properties
content
complex
minOccurs
0
maxOccurs
unbounded
Model
Children
details , overallBValue , pdbEntryIdList , refProtocol , refSpace , software , targetCriteria
Instance
<fitting >
<pdbEntryIdList > {1,1} </pdbEntryIdList>
<software > {0,1} </software>
<refProtocol > {0,1} </refProtocol>
<targetCriteria > {0,1} </targetCriteria>
<overallBValue > {0,1} </overallBValue>
<refSpace > {0,1} </refSpace>
<details > {0,1} </details>
</fitting>
Source
<xs:element name= "fitting" type= "fittingType" minOccurs= "0" maxOccurs= "unbounded" />
Element
expType / specimenPreparation
Namespace
No namespace
Diagram
Type
smplPrepType
Properties
Model
Children
buffer , crystalGrowDetails , helicalParameters , specimenConc , specimenState , specimenSupportDetails , staining , threeDCrystalParameters , twoDCrystalParameters
Instance
<specimenPreparation >
<specimenState > {0,1} </specimenState>
<specimenConc units= "mg/ml" > {0,1} </specimenConc>
<buffer > {0,1} </buffer>
<staining > {0,1} </staining>
<specimenSupportDetails > {0,1} </specimenSupportDetails>
<twoDCrystalParameters > {0,1} </twoDCrystalParameters>
<threeDCrystalParameters > {0,1} </threeDCrystalParameters>
<helicalParameters > {0,1} </helicalParameters>
<crystalGrowDetails > {0,1} </crystalGrowDetails>
</specimenPreparation>
Source
<xs:element name= "specimenPreparation" type= "smplPrepType" />
Namespace
No namespace
Diagram
Type
specimenType
Properties
content
simple
minOccurs
0
Facets
enumeration
particle
enumeration
filament
enumeration
twoDArray
enumeration
threeDArray
enumeration
helicalArray
enumeration
tissue
enumeration
cell
Source
<xs:element name= "specimenState" type= "specimenType" minOccurs= "0" />
Namespace
No namespace
Diagram
Type
twoDxtalParamType
Properties
content
complex
minOccurs
0
maxOccurs
1
Model
Children
aLength , alpha , bLength , beta , cLength , gamma , planeGroup
Instance
<twoDCrystalParameters >
<aLength units= "A" > {0,1} </aLength>
<bLength units= "A" > {0,1} </bLength>
<cLength units= "A" > {0,1} </cLength>
<alpha units= "degrees" > {0,1} </alpha>
<beta units= "degrees" > {0,1} </beta>
<gamma units= "degrees" > {0,1} </gamma>
<planeGroup > {1,1} </planeGroup>
</twoDCrystalParameters>
Source
<xs:element name= "twoDCrystalParameters" type= "twoDxtalParamType" minOccurs= "0" maxOccurs= "1" />
Namespace
No namespace
Diagram
Type
plGrpType
Properties
Facets
enumeration
P 1
enumeration
P 2
enumeration
P 1 2
enumeration
P 1 21
enumeration
C 1 2
enumeration
P 2 2 2
enumeration
P 2 2 21
enumeration
P 2 21 21
enumeration
C 2 2 2
enumeration
P 4
enumeration
P 4 2 2
enumeration
P 4 21 2
enumeration
P 3
enumeration
P 3 1 2
enumeration
P 3 2 1
enumeration
P 6
enumeration
P 6 2 2
Source
<xs:element name= "planeGroup" type= "plGrpType" />
Namespace
No namespace
Diagram
Type
threeDxtalParamType
Properties
content
complex
minOccurs
0
maxOccurs
1
Model
Children
aLength , alpha , bLength , beta , cLength , gamma , spaceGroup
Instance
<threeDCrystalParameters >
<aLength units= "A" > {0,1} </aLength>
<bLength units= "A" > {0,1} </bLength>
<cLength units= "A" > {0,1} </cLength>
<alpha units= "degrees" > {0,1} </alpha>
<beta units= "degrees" > {0,1} </beta>
<gamma units= "degrees" > {0,1} </gamma>
<spaceGroup > {0,1} </spaceGroup>
</threeDCrystalParameters>
Source
<xs:element name= "threeDCrystalParameters" type= "threeDxtalParamType" minOccurs= "0" maxOccurs= "1" />
Namespace
No namespace
Diagram
Type
processType
Properties
content
complex
maxOccurs
1
Model
Children
helical , method , reconstruction , singleParticle , subtomogramAveraging , tomography , twoDCrystal
Instance
<processing >
<method > {1,1} </method>
<reconstruction > {1,unbounded} </reconstruction>
<twoDCrystal > {1,1} </twoDCrystal>
<helical > {1,1} </helical>
<subtomogramAveraging > {1,1} </subtomogramAveraging>
<tomography > {1,1} </tomography>
<singleParticle > {1,1} </singleParticle>
</processing>
Source
<xs:element name= "processing" type= "processType" maxOccurs= "1" />
Namespace
No namespace
Diagram
Type
methodType
Properties
Facets
enumeration
twoDCrystal
enumeration
singleParticle
enumeration
tomography
enumeration
subtomogramAveraging
enumeration
helical
Source
<xs:element name= "method" type= "methodType" />
Namespace
No namespace
Diagram
Type
reconsType
Properties
content
complex
maxOccurs
unbounded
Model
Children
algorithm , ctfCorrection , details , eulerAnglesDetails , resolutionByAuthor , resolutionMethod , software
Instance
<reconstruction >
<algorithm > {0,1} </algorithm>
<software > {0,1} </software>
<ctfCorrection > {0,1} </ctfCorrection>
<resolutionByAuthor > {0,1} </resolutionByAuthor>
<resolutionMethod > {0,1} </resolutionMethod>
<details > {0,1} </details>
<eulerAnglesDetails > {0,1} </eulerAnglesDetails>
</reconstruction>
Source
<xs:element name= "reconstruction" type= "reconsType" maxOccurs= "unbounded" />
Complex Type entryType
Complex Type adminType
Complex Type depType
Namespace
No namespace
Annotations
Contains context information relevant to the EMD entry
record
Diagram
Used by
Model
status ,
depositionDate ,
depositionSite ,
processingSite ,
headerReleaseDate ,
mapReleaseDate{0,1} ,
obsoletedDate{0,1} ,
supersededByList{0,1} ,
replaceExistingEntry{0,1} ,
obsoleteList{0,1} ,
details{0,1} ,
inFrameEMDBId{0,1} ,
title ,
authors ,
keywords{0,1} ,
fittedPDBEntryIdList{0,1} ,
primaryReference ,
secondaryReference*
Children
authors , depositionDate , depositionSite , details , fittedPDBEntryIdList , headerReleaseDate , inFrameEMDBId , keywords , mapReleaseDate , obsoleteList , obsoletedDate , primaryReference , processingSite , replaceExistingEntry , secondaryReference , status , supersededByList , title
Source
<xs:complexType name= "depType" >
<xs:annotation >
<xs:documentation xml:lang= "en" > Contains context information relevant to the EMD entry record </xs:documentation>
</xs:annotation>
<xs:sequence >
<xs:element name= "status" minOccurs= "1" maxOccurs= "1" >
<xs:complexType >
<xs:simpleContent >
<xs:extension base= "status" >
<xs:attribute name= "prior" type= "status" />
</xs:extension>
</xs:simpleContent>
</xs:complexType>
</xs:element>
<xs:element name= "depositionDate" type= "xs:date" minOccurs= "1" maxOccurs= "1" />
<xs:element name= "depositionSite" minOccurs= "1" maxOccurs= "1" >
<xs:simpleType >
<xs:restriction base= "xs:token" >
<xs:enumeration value= "PDBe" />
<xs:enumeration value= "RCSB" />
<xs:enumeration value= "PDBj" />
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name= "processingSite" minOccurs= "1" maxOccurs= "1" >
<xs:simpleType >
<xs:restriction base= "xs:token" >
<xs:enumeration value= "PDBe" />
<xs:enumeration value= "RCSB" />
<xs:enumeration value= "PDBj" />
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name= "headerReleaseDate" type= "xs:date" minOccurs= "1" maxOccurs= "1" />
<xs:element name= "mapReleaseDate" type= "xs:date" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "obsoletedDate" type= "xs:date" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "supersededByList" type= "emdbListType" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "replaceExistingEntry" type= "xs:boolean" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "obsoleteList" type= "emdbListType" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "details" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "inFrameEMDBId" type= "emdbEntryIdType" minOccurs= "0" />
<xs:element name= "title" type= "xs:string" minOccurs= "1" maxOccurs= "1" />
<xs:element name= "authors" type= "xs:string" minOccurs= "1" maxOccurs= "1" />
<xs:element name= "keywords" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "fittedPDBEntryIdList" type= "pdbidListType" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "primaryReference" type= "prRefType" minOccurs= "1" maxOccurs= "1" />
<xs:element name= "secondaryReference" type= "prRefType" minOccurs= "0" maxOccurs= "unbounded" />
</xs:sequence>
</xs:complexType>
Simple Type status
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
REL
enumeration
HPUB
enumeration
HOLD1
enumeration
OBS
Used by
Source
<xs:simpleType name= "status" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "REL" />
<xs:enumeration value= "HPUB" />
<xs:enumeration value= "HOLD1" />
<xs:enumeration value= "OBS" />
</xs:restriction>
</xs:simpleType>
Complex Type emdbListType
Simple Type emdbType
Simple Type emdbEntryIdType
Complex Type pdbidListType
Simple Type pdbidType
Complex Type prRefType
Complex Type pubType
Complex Type jrnlArtType
Namespace
No namespace
Diagram
Used by
Model
authors ,
articleTitle ,
journal ,
volume{0,1} ,
firstPage{0,1} ,
lastPage{0,1} ,
year{0,1} ,
externalReference*
Children
articleTitle , authors , externalReference , firstPage , journal , lastPage , volume , year
Source
<xs:complexType name= "jrnlArtType" >
<xs:sequence >
<xs:element name= "authors" type= "xs:string" />
<xs:element name= "articleTitle" type= "xs:string" />
<xs:element name= "journal" type= "xs:string" />
<xs:element name= "volume" type= "xs:string" minOccurs= "0" />
<xs:element name= "firstPage" type= "xs:string" minOccurs= "0" />
<xs:element name= "lastPage" type= "xs:string" minOccurs= "0" />
<xs:element name= "year" type= "xs:string" minOccurs= "0" />
<xs:element name= "externalReference" type= "externalRefType" minOccurs= "0" maxOccurs= "unbounded" />
</xs:sequence>
</xs:complexType>
Complex Type externalRefType
Complex Type nonJrnlArtType
Namespace
No namespace
Diagram
Used by
Model
authors ,
chapterTitle{0,1} ,
book{0,1} ,
thesisTitle{0,1} ,
editor{0,1} ,
publisher{0,1} ,
publisherLocation{0,1} ,
volume{0,1} ,
firstPage{0,1} ,
lastPage{0,1} ,
year{0,1} ,
externalReference*
Children
authors , book , chapterTitle , editor , externalReference , firstPage , lastPage , publisher , publisherLocation , thesisTitle , volume , year
Source
<xs:complexType name= "nonJrnlArtType" >
<xs:sequence >
<xs:element name= "authors" type= "xs:string" />
<xs:element name= "chapterTitle" type= "xs:string" minOccurs= "0" />
<xs:element name= "book" type= "xs:string" minOccurs= "0" />
<xs:element name= "thesisTitle" type= "xs:string" minOccurs= "0" />
<xs:element name= "editor" type= "xs:string" minOccurs= "0" />
<xs:element name= "publisher" type= "xs:string" minOccurs= "0" />
<xs:element name= "publisherLocation" type= "xs:string" minOccurs= "0" />
<xs:element name= "volume" type= "xs:string" minOccurs= "0" />
<xs:element name= "firstPage" type= "xs:string" minOccurs= "0" />
<xs:element name= "lastPage" type= "xs:string" minOccurs= "0" />
<xs:element name= "year" type= "xs:string" minOccurs= "0" />
<xs:element name= "externalReference" type= "externalRefType" minOccurs= "0" maxOccurs= "unbounded" />
</xs:sequence>
</xs:complexType>
Complex Type mapType
Namespace
No namespace
Annotations
Information on the volume density map
Diagram
Used by
Model
Children
annotationDetails , axisOrder , cell , contourLevel , dataType , details , dimensions , file , limit , origin , pixelSpacing , spaceGroupNumber , spacing , statistics
Source
<xs:complexType name= "mapType" >
<xs:annotation >
<xs:documentation xml:lang= "en" > Information on the volume density map </xs:documentation>
</xs:annotation>
<xs:all >
<xs:element name= "file" type= "mapFileType" />
<xs:element name= "dataType" type= "mapDataType" />
<xs:element name= "dimensions" type= "dimensionType" />
<xs:element name= "origin" type= "originType" />
<xs:element name= "limit" type= "limitType" />
<xs:element name= "spacing" type= "spacingType" />
<xs:element name= "cell" type= "cellType" />
<xs:element name= "axisOrder" type= "axisOrderType" />
<xs:element name= "statistics" type= "statisticsType" />
<xs:element name= "spaceGroupNumber" type= "xs:string" />
<xs:element name= "details" type= "xs:string" />
<xs:element name= "pixelSpacing" type= "pixelSpacingType" />
<xs:element name= "contourLevel" minOccurs= "0" >
<xs:complexType >
<xs:simpleContent >
<xs:extension base= "xs:float" >
<xs:attribute name= "source" type= "xs:string" use= "optional" />
</xs:extension>
</xs:simpleContent>
</xs:complexType>
</xs:element>
<xs:element name= "annotationDetails" type= "xs:string" minOccurs= "0" />
</xs:all>
</xs:complexType>
Complex Type mapFileType
Simple Type mapNamePattern
Simple Type mapDataType
Complex Type dimensionType
Complex Type originType
Complex Type limitType
Complex Type spacingType
Complex Type cellType
Complex Type cType
Simple Type allowedCellDim
Complex Type cAngleType
Simple Type allowedAngles
Complex Type axisOrderType
Complex Type statisticsType
Complex Type pixelSpacingType
Complex Type pixType
Complex Type supplType
Complex Type mskSetType
Complex Type mskType
Namespace
No namespace
Diagram
Used by
Model
Children
annotationDetails , axisOrder , cell , dataType , details , dimensions , file , limit , origin , pixelSpacing , spaceGroupNumber , spacing , statistics
Source
<xs:complexType name= "mskType" >
<xs:all >
<xs:element name= "file" type= "mskFileType" />
<xs:element name= "dataType" type= "mapDataType" />
<xs:element name= "dimensions" type= "dimensionType" />
<xs:element name= "spacing" type= "spacingType" />
<xs:element name= "origin" type= "originType" />
<xs:element name= "limit" type= "limitType" />
<xs:element name= "cell" type= "cellType" />
<xs:element name= "axisOrder" type= "axisOrderType" />
<xs:element name= "statistics" type= "statisticsType" minOccurs= "0" />
<xs:element name= "pixelSpacing" type= "pixelSpacingType" />
<xs:element name= "details" type= "xs:string" minOccurs= "0" />
<xs:element name= "annotationDetails" type= "xs:string" minOccurs= "0" />
<xs:element name= "spaceGroupNumber" type= "xs:string" minOccurs= "0" />
</xs:all>
</xs:complexType>
Complex Type mskFileType
Simple Type maskNamePattern
Complex Type slcSetType
Complex Type slcType
Namespace
No namespace
Diagram
Used by
Model
Children
annotationDetails , axisOrder , cell , dataType , details , dimensions , file , limit , origin , pixelSpacing , spaceGroupNumber , spacing , statistics
Source
<xs:complexType name= "slcType" >
<xs:all >
<xs:element name= "file" type= "slcFileType" />
<xs:element name= "dataType" type= "mapDataType" />
<xs:element name= "dimensions" type= "slcDimensionType" />
<xs:element name= "spacing" type= "slcSpacingType" />
<xs:element name= "origin" type= "originType" />
<xs:element name= "limit" type= "limitType" />
<xs:element name= "cell" type= "slcCellType" />
<xs:element name= "axisOrder" type= "axisOrderType" />
<xs:element name= "statistics" type= "statisticsType" />
<xs:element name= "pixelSpacing" type= "pixelSpacingType" />
<xs:element name= "details" type= "xs:string" />
<xs:element name= "annotationDetails" type= "xs:string" minOccurs= "0" />
<xs:element name= "spaceGroupNumber" type= "xs:string" />
</xs:all>
</xs:complexType>
Complex Type slcFileType
Simple Type slcNamePattern
Complex Type slcDimensionType
Complex Type slcSpacingType
Complex Type slcCellType
Complex Type slcCType
Simple Type allowedSlcCellDim
Complex Type figSetType
Complex Type figType
Complex Type fscSetType
Complex Type fscType
Complex Type samplType
Complex Type mwType
Complex Type smplCompListType
Complex Type smplCompType
Namespace
No namespace
Annotations
A single sample component.
[/emdEntry/sample/sampleComponentList/sampleComponent]
Diagram
Used by
Model
entry ,
sciName ,
synName{0,1} ,
molWtTheo{0,1} ,
molWtExp{0,1} ,
details{0,1} , (
protein |
cellular-component |
virus |
nucleic-acid |
ligand |
label |
ribosome-eukaryote |
ribosome-prokaryote )
Children
cellular-component , details , entry , label , ligand , molWtExp , molWtTheo , nucleic-acid , protein , ribosome-eukaryote , ribosome-prokaryote , sciName , synName , virus
Attributes
Source
<xs:complexType name= "smplCompType" >
<xs:annotation >
<xs:documentation > A single sample component. [/emdEntry/sample/sampleComponentList/sampleComponent] </xs:documentation>
</xs:annotation>
<xs:sequence >
<xs:element name= "entry" type= "cmpntClassType" />
<xs:element name= "sciName" type= "xs:string" />
<xs:element name= "synName" type= "xs:string" minOccurs= "0" />
<xs:element name= "molWtTheo" type= "mwType" minOccurs= "0" />
<xs:element name= "molWtExp" type= "mwType" minOccurs= "0" />
<xs:element name= "details" type= "xs:string" minOccurs= "0" />
<xs:choice >
<xs:element name= "protein" type= "proteinType" />
<xs:element name= "cellular-component" type= "cellCompType" />
<xs:element name= "virus" type= "virusType" />
<xs:element name= "nucleic-acid" type= "nuclAcidType" />
<xs:element name= "ligand" type= "ligandType" />
<xs:element name= "label" type= "labelType" />
<xs:element name= "ribosome-eukaryote" type= "riboTypeEu" />
<xs:element name= "ribosome-prokaryote" type= "riboTypePro" />
</xs:choice>
</xs:sequence>
<xs:attribute name= "componentID" type= "xs:positiveInteger" use= "required" />
</xs:complexType>
Simple Type cmpntClassType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
virus
enumeration
cellular-component
enumeration
protein
enumeration
nucleic-acid
enumeration
ligand
enumeration
label
enumeration
ribosome-eukaryote
enumeration
ribosome-prokaryote
Used by
Source
<xs:simpleType name= "cmpntClassType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "virus" />
<xs:enumeration value= "cellular-component" />
<xs:enumeration value= "protein" />
<xs:enumeration value= "nucleic-acid" />
<xs:enumeration value= "ligand" />
<xs:enumeration value= "label" />
<xs:enumeration value= "ribosome-eukaryote" />
<xs:enumeration value= "ribosome-prokaryote" />
</xs:restriction>
</xs:simpleType>
Complex Type proteinType
Complex Type sciSpeciesType
Complex Type natSrcType
Complex Type engSrcType
Complex Type externalReferencesType
Simple Type uniProtType
Simple Type goIdType
Simple Type iprIdType
Complex Type cellCompType
Complex Type virusType
Namespace
No namespace
Diagram
Used by
Model
Children
class , empty , engSource , enveloped , externalReferences , isolate , natSource , sciSpeciesName , sciSpeciesSerocomplex , sciSpeciesSerotype , sciSpeciesStrain , sciSpeciesSubspecies , shell , synSpeciesName
Source
<xs:complexType name= "virusType" >
<xs:choice maxOccurs= "unbounded" >
<xs:element name= "sciSpeciesName" type= "sciSpeciesType" minOccurs= "1" maxOccurs= "1" />
<xs:element name= "synSpeciesName" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "sciSpeciesSerotype" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "sciSpeciesSerocomplex" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "sciSpeciesSubspecies" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "sciSpeciesStrain" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "empty" type= "xs:boolean" minOccurs= "1" maxOccurs= "1" />
<xs:element name= "enveloped" type= "xs:boolean" minOccurs= "1" maxOccurs= "1" />
<xs:element name= "isolate" type= "virusIsolType" minOccurs= "1" maxOccurs= "1" />
<xs:element name= "class" type= "virusClassType" minOccurs= "1" maxOccurs= "1" />
<xs:element name= "externalReferences" type= "externalReferencesType" minOccurs= "0" />
<xs:element name= "natSource" type= "natSrcVirusType" minOccurs= "0" />
<xs:element name= "engSource" type= "engSrcType" minOccurs= "0" />
<xs:element name= "shell" type= "shellType" minOccurs= "0" />
</xs:choice>
</xs:complexType>
Simple Type virusIsolType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
STRAIN
enumeration
SEROTYPE
enumeration
SEROCOMPLEX
enumeration
SUBSPECIES
enumeration
SPECIES
enumeration
OTHER
Used by
Source
<xs:simpleType name= "virusIsolType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "STRAIN" />
<xs:enumeration value= "SEROTYPE" />
<xs:enumeration value= "SEROCOMPLEX" />
<xs:enumeration value= "SUBSPECIES" />
<xs:enumeration value= "SPECIES" />
<xs:enumeration value= "OTHER" />
</xs:restriction>
</xs:simpleType>
Simple Type virusClassType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
VIRION
enumeration
SATELLITE
enumeration
PRION
enumeration
VIROID
enumeration
VIRUS-LIKE PARTICLE
enumeration
OTHER
Used by
Source
<xs:simpleType name= "virusClassType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "VIRION" />
<xs:enumeration value= "SATELLITE" />
<xs:enumeration value= "PRION" />
<xs:enumeration value= "VIROID" />
<xs:enumeration value= "VIRUS-LIKE PARTICLE" />
<xs:enumeration value= "OTHER" />
</xs:restriction>
</xs:simpleType>
Complex Type natSrcVirusType
Simple Type hostCategoryType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
ARCHAEA
enumeration
ALGAE
enumeration
BACTERIA(EUBACTERIA)
enumeration
FUNGI
enumeration
INVERTEBRATES
enumeration
PLANTAE(HIGHER PLANTS)
enumeration
VERTEBRATES
enumeration
PROTOZOA
Used by
Source
<xs:simpleType name= "hostCategoryType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "ARCHAEA" />
<xs:enumeration value= "ALGAE" />
<xs:enumeration value= "BACTERIA(EUBACTERIA)" />
<xs:enumeration value= "FUNGI" />
<xs:enumeration value= "INVERTEBRATES" />
<xs:enumeration value= "PLANTAE(HIGHER PLANTS)" />
<xs:enumeration value= "VERTEBRATES" />
<xs:enumeration value= "PROTOZOA" />
</xs:restriction>
</xs:simpleType>
Complex Type shellType
Complex Type diamType
Simple Type floatOrNAType
Complex Type nuclAcidType
Simple Type naClassType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
DNA
enumeration
DNA/RNA
enumeration
PEPTIDE NUCLEIC ACID
enumeration
PEPTIDE NUCLEIC ACID/DNA
enumeration
RIBOZYME
enumeration
RNA
enumeration
T-RNA
enumeration
OTHER
Used by
Source
<xs:simpleType name= "naClassType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "DNA" />
<xs:enumeration value= "DNA/RNA" />
<xs:enumeration value= "PEPTIDE NUCLEIC ACID" />
<xs:enumeration value= "PEPTIDE NUCLEIC ACID/DNA" />
<xs:enumeration value= "RIBOZYME" />
<xs:enumeration value= "RNA" />
<xs:enumeration value= "T-RNA" />
<xs:enumeration value= "OTHER" />
</xs:restriction>
</xs:simpleType>
Simple Type naStructType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
SINGLE STRANDED
enumeration
DOUBLE HELIX
enumeration
TRIPLE HELIX
enumeration
QUADRUPLE HELIX
enumeration
OTHER
Used by
Source
<xs:simpleType name= "naStructType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "SINGLE STRANDED" />
<xs:enumeration value= "DOUBLE HELIX" />
<xs:enumeration value= "TRIPLE HELIX" />
<xs:enumeration value= "QUADRUPLE HELIX" />
<xs:enumeration value= "OTHER" />
</xs:restriction>
</xs:simpleType>
Complex Type ligandType
Complex Type labelType
Complex Type riboTypeEu
Namespace
No namespace
Diagram
Used by
Model
ALL(
eukaryote sciSpeciesName{0,1} sciSpeciesStrain{0,1} synSpeciesName{0,1} oligomericDetails{0,1} numCopies{0,1} recombinantExpFlag{0,1} natSource{0,1} engSource{0,1} details{0,1} externalReferences{0,1} )
Children
details , engSource , eukaryote , externalReferences , natSource , numCopies , oligomericDetails , recombinantExpFlag , sciSpeciesName , sciSpeciesStrain , synSpeciesName
Source
<xs:complexType name= "riboTypeEu" >
<xs:all >
<xs:element name= "eukaryote" type= "xs:string" minOccurs= "1" />
<!-- ES: This is mandatory for new entries (EmDep version 4.0) but not for older -->
<xs:element name= "sciSpeciesName" type= "sciSpeciesType" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "sciSpeciesStrain" type= "xs:string" minOccurs= "0" />
<xs:element name= "synSpeciesName" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "oligomericDetails" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "numCopies" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<!-- ES: This is mandatory for new entries (EmDep version 4.0) but not for older -->
<xs:element name= "recombinantExpFlag" type= "xs:boolean" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "natSource" type= "natSrcType" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "engSource" type= "engSrcType" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "details" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "externalReferences" type= "externalReferencesType" minOccurs= "0" maxOccurs= "1" />
</xs:all>
</xs:complexType>
Complex Type riboTypePro
Namespace
No namespace
Diagram
Used by
Model
ALL(
prokaryote sciSpeciesName{0,1} sciSpeciesStrain{0,1} synSpeciesName{0,1} oligomericDetails{0,1} numCopies{0,1} recombinantExpFlag{0,1} natSource{0,1} engSource{0,1} details{0,1} externalReferences{0,1} )
Children
details , engSource , externalReferences , natSource , numCopies , oligomericDetails , prokaryote , recombinantExpFlag , sciSpeciesName , sciSpeciesStrain , synSpeciesName
Source
<xs:complexType name= "riboTypePro" >
<xs:all >
<xs:element name= "prokaryote" type= "xs:string" minOccurs= "1" />
<!-- ES: This is mandatory for new entries (EmDep version 4.0) but not for older -->
<xs:element name= "sciSpeciesName" type= "sciSpeciesType" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "sciSpeciesStrain" type= "xs:string" minOccurs= "0" />
<xs:element name= "synSpeciesName" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "oligomericDetails" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "numCopies" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<!-- ES: This is mandatory for new entries (EmDep version 4.0) but not for older -->
<xs:element name= "recombinantExpFlag" type= "xs:boolean" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "natSource" type= "natSrcType" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "engSource" type= "engSrcType" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "details" type= "xs:string" minOccurs= "0" maxOccurs= "1" />
<xs:element name= "externalReferences" type= "externalReferencesType" minOccurs= "0" maxOccurs= "1" />
</xs:all>
</xs:complexType>
Complex Type expType
Complex Type vitrifType
Simple Type cryogenType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
ETHANE
enumeration
ETHANE-PROPANE MIXTURE
enumeration
METHANE
enumeration
NITROGEN
enumeration
HELIUM
enumeration
PROPANE
enumeration
FREON 12
enumeration
FREON 22
enumeration
NONE
enumeration
OTHER
Used by
Source
<xs:simpleType name= "cryogenType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "ETHANE" />
<xs:enumeration value= "ETHANE-PROPANE MIXTURE" />
<xs:enumeration value= "METHANE" />
<xs:enumeration value= "NITROGEN" />
<xs:enumeration value= "HELIUM" />
<xs:enumeration value= "PROPANE" />
<xs:enumeration value= "FREON 12" />
<xs:enumeration value= "FREON 22" />
<xs:enumeration value= "NONE" />
<xs:enumeration value= "OTHER" />
</xs:restriction>
</xs:simpleType>
Complex Type tempType
Simple Type vitrInstrType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
BAL-TEC HPM 010
enumeration
EMS-002 RAPID IMMERSION FREEZER
enumeration
FEI VITROBOT
enumeration
FEI VITROBOT MARK I
enumeration
FEI VITROBOT MARK II
enumeration
FEI VITROBOT MARK III
enumeration
FEI VITROBOT MARK IV
enumeration
GATAN CRYOPLUNGE 3
enumeration
HOMEMADE PLUNGER
enumeration
LEICA PLUNGER
enumeration
LEICA EM GP
enumeration
LEICA EM CPC
enumeration
LEICA EM HPM100
enumeration
LEICA EM PACT
enumeration
LEICA EM PACT2
enumeration
LEICA KF80
enumeration
NONE
enumeration
REICHERT-JUNG PLUNGER
enumeration
ZEISS PLUNGE FREEZER CRYOBOX
enumeration
OTHER
enumeration
SPOTITON
Used by
Source
<xs:simpleType name= "vitrInstrType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "BAL-TEC HPM 010" />
<xs:enumeration value= "EMS-002 RAPID IMMERSION FREEZER" />
<xs:enumeration value= "FEI VITROBOT" />
<xs:enumeration value= "FEI VITROBOT MARK I" />
<xs:enumeration value= "FEI VITROBOT MARK II" />
<xs:enumeration value= "FEI VITROBOT MARK III" />
<xs:enumeration value= "FEI VITROBOT MARK IV" />
<xs:enumeration value= "GATAN CRYOPLUNGE 3" />
<xs:enumeration value= "HOMEMADE PLUNGER" />
<xs:enumeration value= "LEICA PLUNGER" />
<xs:enumeration value= "LEICA EM GP" />
<xs:enumeration value= "LEICA EM CPC" />
<xs:enumeration value= "LEICA EM HPM100" />
<xs:enumeration value= "LEICA EM PACT" />
<xs:enumeration value= "LEICA EM PACT2" />
<xs:enumeration value= "LEICA KF80" />
<xs:enumeration value= "NONE" />
<xs:enumeration value= "REICHERT-JUNG PLUNGER" />
<xs:enumeration value= "ZEISS PLUNGE FREEZER CRYOBOX" />
<xs:enumeration value= "OTHER" />
<xs:enumeration value= "SPOTITON" />
</xs:restriction>
</xs:simpleType>
Complex Type imgType
Namespace
No namespace
Diagram
Used by
Model
ALL(
astigmatism{0,1} electronSource electronDose{0,1} energyFilter{0,1} imagingMode nominalDefocusMin{0,1} nominalDefocusMax{0,1} illuminationMode specimenHolder{0,1} details{0,1} detector{0,1} nominalCs{0,1} tiltAngleMin{0,1} calibratedMagnification{0,1} tiltAngleMax{0,1} temperature{0,1} temperatureMin{0,1} temperatureMax{0,1} microscope date{0,1} specimenHolderModel acceleratingVoltage{0,1} nominalMagnification{0,1} energyWindow{0,1} detectorDistance{0,1} electronBeamTiltParams{0,1} )
Children
acceleratingVoltage , astigmatism , calibratedMagnification , date , details , detector , detectorDistance , electronBeamTiltParams , electronDose , electronSource , energyFilter , energyWindow , illuminationMode , imagingMode , microscope , nominalCs , nominalDefocusMax , nominalDefocusMin , nominalMagnification , specimenHolder , specimenHolderModel , temperature , temperatureMax , temperatureMin , tiltAngleMax , tiltAngleMin
Source
<xs:complexType name= "imgType" >
<xs:all >
<xs:element name= "astigmatism" type= "xs:string" minOccurs= "0" />
<xs:element name= "electronSource" type= "eSourceType" />
<xs:element name= "electronDose" type= "eDoseType" minOccurs= "0" />
<xs:element name= "energyFilter" type= "xs:string" minOccurs= "0" />
<xs:element name= "imagingMode" type= "imgModeType" />
<xs:element name= "nominalDefocusMin" type= "defocusType" minOccurs= "0" />
<xs:element name= "nominalDefocusMax" type= "defocusType" minOccurs= "0" />
<xs:element name= "illuminationMode" type= "illumType" />
<xs:element name= "specimenHolder" type= "xs:string" minOccurs= "0" />
<xs:element name= "details" type= "xs:string" minOccurs= "0" />
<xs:element name= "detector" type= "detectorType" minOccurs= "0" />
<xs:element name= "nominalCs" type= "csType" minOccurs= "0" />
<xs:element name= "tiltAngleMin" type= "tiltType" minOccurs= "0" />
<xs:element name= "calibratedMagnification" type= "xs:float" minOccurs= "0" />
<xs:element name= "tiltAngleMax" type= "tiltType" minOccurs= "0" />
<xs:element name= "temperature" type= "tempType" minOccurs= "0" />
<xs:element name= "temperatureMin" type= "tempType" minOccurs= "0" />
<xs:element name= "temperatureMax" type= "tempType" minOccurs= "0" />
<xs:element name= "microscope" type= "microscopeType" />
<xs:element name= "date" type= "xs:string" minOccurs= "0" />
<xs:element name= "specimenHolderModel" type= "specimenHolderType" />
<xs:element name= "acceleratingVoltage" type= "accVoltType" minOccurs= "0" />
<xs:element name= "nominalMagnification" type= "xs:float" minOccurs= "0" />
<xs:element name= "energyWindow" type= "eWindowType" minOccurs= "0" />
<xs:element name= "detectorDistance" type= "xs:string" minOccurs= "0" />
<xs:element name= "electronBeamTiltParams" type= "xs:string" minOccurs= "0" />
</xs:all>
</xs:complexType>
Simple Type eSourceType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
TUNGSTEN HAIRPIN
enumeration
LAB6
enumeration
FIELD EMISSION GUN
enumeration
OTHER
Used by
Source
<xs:simpleType name= "eSourceType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "TUNGSTEN HAIRPIN" />
<xs:enumeration value= "LAB6" />
<xs:enumeration value= "FIELD EMISSION GUN" />
<xs:enumeration value= "OTHER" />
</xs:restriction>
</xs:simpleType>
Complex Type eDoseType
Simple Type imgModeType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
BRIGHT FIELD
enumeration
DARK FIELD
enumeration
DIFFRACTION
enumeration
OTHER
Used by
Source
<xs:simpleType name= "imgModeType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "BRIGHT FIELD" />
<xs:enumeration value= "DARK FIELD" />
<xs:enumeration value= "DIFFRACTION" />
<xs:enumeration value= "OTHER" />
</xs:restriction>
</xs:simpleType>
Complex Type defocusType
Simple Type defocusAllowed
Simple Type illumType
Simple Type detectorType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
AGFA SCIENTA FILM
enumeration
KODAK 4489 FILM
enumeration
KODAK SO-163 FILM
enumeration
GENERIC FILM
enumeration
GENERIC IMAGE PLATES
enumeration
DIRECT ELECTRON DE-10 (5k x 4k)
enumeration
DIRECT ELECTRON DE-12 (4k x 3k)
enumeration
DIRECT ELECTRON DE-16 (4k x 4k)
enumeration
DIRECT ELECTRON DE-20 (5k x 3k)
enumeration
DIRECT ELECTRON DE-64 (8k x 8k)
enumeration
FEI CETA (4k x 4k)
enumeration
FEI EAGLE (2k x 2k)
enumeration
FEI EAGLE (4k x 4k)
enumeration
FEI FALCON I (4k x 4k)
enumeration
FEI FALCON II (4k x 4k)
enumeration
FEI FALCON III (4k x 4k)
enumeration
GATAN MULTISCAN
enumeration
GATAN ORIUS SC200 (2k x 2k)
enumeration
GATAN ORIUS SC600 (2.7k x 2.7k)
enumeration
GATAN ORIUS SC1000 (4k x 2.7k)
enumeration
GATAN ULTRASCAN 1000 (2k x 2k)
enumeration
GATAN ULTRASCAN 4000 (4k x 4k)
enumeration
GATAN ULTRASCAN 10000 (10k x 10k)
enumeration
GATAN K2 (4k x 4k)
enumeration
GATAN K2 BASE (4k x 4k)
enumeration
GATAN K2 SUMMIT (4k x 4k)
enumeration
GATAN K2 IS (4k x 4k)
enumeration
GATAN K2 QUANTUM (4k x 4k)
enumeration
GENERIC GATAN (2k x 2k)
enumeration
GENERIC GATAN (4k x 4k)
enumeration
GENERIC GATAN
enumeration
PROSCAN TEM-PIV (2k x 2k)
enumeration
SIA 15C (3k x 3k)
enumeration
TVIPS TEMCAM-F816 (8k x 8k)
enumeration
TVIPS TEMCAM-F415 (4k x 4k)
enumeration
TVIPS TEMCAM-F416 (4k x 4k)
enumeration
TVIPS TEMCAM-F216 (2k x 2k)
enumeration
TVIPS TEMCAM-F224 (2k x 2k)
enumeration
GENERIC TVIPS (2k x 2k)
enumeration
GENERIC TVIPS (4k x 4k)
enumeration
GENERIC TVIPS
enumeration
GENERIC CCD (2k x 2k)
enumeration
GENERIC CCD (4k x 4k)
enumeration
GENERIC CCD
enumeration
OTHER
Used by
Source
<xs:simpleType name= "detectorType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "AGFA SCIENTA FILM" />
<xs:enumeration value= "KODAK 4489 FILM" />
<xs:enumeration value= "KODAK SO-163 FILM" />
<xs:enumeration value= "GENERIC FILM" />
<xs:enumeration value= "GENERIC IMAGE PLATES" />
<xs:enumeration value= "DIRECT ELECTRON DE-10 (5k x 4k)" />
<xs:enumeration value= "DIRECT ELECTRON DE-12 (4k x 3k)" />
<xs:enumeration value= "DIRECT ELECTRON DE-16 (4k x 4k)" />
<xs:enumeration value= "DIRECT ELECTRON DE-20 (5k x 3k)" />
<xs:enumeration value= "DIRECT ELECTRON DE-64 (8k x 8k)" />
<xs:enumeration value= "FEI CETA (4k x 4k)" />
<xs:enumeration value= "FEI EAGLE (2k x 2k)" />
<xs:enumeration value= "FEI EAGLE (4k x 4k)" />
<xs:enumeration value= "FEI FALCON I (4k x 4k)" />
<xs:enumeration value= "FEI FALCON II (4k x 4k)" />
<xs:enumeration value= "FEI FALCON III (4k x 4k)" />
<xs:enumeration value= "GATAN MULTISCAN" />
<xs:enumeration value= "GATAN ORIUS SC200 (2k x 2k)" />
<xs:enumeration value= "GATAN ORIUS SC600 (2.7k x 2.7k)" />
<xs:enumeration value= "GATAN ORIUS SC1000 (4k x 2.7k)" />
<xs:enumeration value= "GATAN ULTRASCAN 1000 (2k x 2k)" />
<xs:enumeration value= "GATAN ULTRASCAN 4000 (4k x 4k)" />
<xs:enumeration value= "GATAN ULTRASCAN 10000 (10k x 10k)" />
<xs:enumeration value= "GATAN K2 (4k x 4k)" />
<xs:enumeration value= "GATAN K2 BASE (4k x 4k)" />
<xs:enumeration value= "GATAN K2 SUMMIT (4k x 4k)" />
<xs:enumeration value= "GATAN K2 IS (4k x 4k)" />
<xs:enumeration value= "GATAN K2 QUANTUM (4k x 4k)" />
<xs:enumeration value= "GENERIC GATAN (2k x 2k)" />
<xs:enumeration value= "GENERIC GATAN (4k x 4k)" />
<xs:enumeration value= "GENERIC GATAN" />
<xs:enumeration value= "PROSCAN TEM-PIV (2k x 2k)" />
<xs:enumeration value= "SIA 15C (3k x 3k)" />
<xs:enumeration value= "TVIPS TEMCAM-F816 (8k x 8k)" />
<xs:enumeration value= "TVIPS TEMCAM-F415 (4k x 4k)" />
<xs:enumeration value= "TVIPS TEMCAM-F416 (4k x 4k)" />
<xs:enumeration value= "TVIPS TEMCAM-F216 (2k x 2k)" />
<xs:enumeration value= "TVIPS TEMCAM-F224 (2k x 2k)" />
<xs:enumeration value= "GENERIC TVIPS (2k x 2k)" />
<xs:enumeration value= "GENERIC TVIPS (4k x 4k)" />
<xs:enumeration value= "GENERIC TVIPS" />
<xs:enumeration value= "GENERIC CCD (2k x 2k)" />
<xs:enumeration value= "GENERIC CCD (4k x 4k)" />
<xs:enumeration value= "GENERIC CCD" />
<xs:enumeration value= "OTHER" />
</xs:restriction>
</xs:simpleType>
Complex Type csType
Complex Type tiltType
Simple Type microscopeType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
FEI MORGAGNI
enumeration
FEI POLARA 300
enumeration
FEI TALOS ARCTICA
enumeration
FEI TECNAI 10
enumeration
FEI TECNAI 12
enumeration
FEI TECNAI 20
enumeration
FEI TECNAI ARCTICA
enumeration
FEI TECNAI F20
enumeration
FEI TECNAI F30
enumeration
FEI TECNAI SPHERA
enumeration
FEI TECNAI SPIRIT
enumeration
FEI TITAN
enumeration
FEI TITAN KRIOS
enumeration
FEI/PHILIPS CM10
enumeration
FEI/PHILIPS CM12
enumeration
FEI/PHILIPS CM120T
enumeration
FEI/PHILIPS CM200FEG
enumeration
FEI/PHILIPS CM200FEG/SOPHIE
enumeration
FEI/PHILIPS CM200FEG/ST
enumeration
FEI/PHILIPS CM200FEG/UT
enumeration
FEI/PHILIPS CM200T
enumeration
FEI/PHILIPS CM300FEG/HE
enumeration
FEI/PHILIPS CM300FEG/ST
enumeration
FEI/PHILIPS CM300FEG/T
enumeration
FEI/PHILIPS EM400
enumeration
FEI/PHILIPS EM420
enumeration
HITACHI EF2000
enumeration
HITACHI H-9500SD
enumeration
HITACHI H3000 UHVEM
enumeration
HITACHI H7600
enumeration
HITACHI HF2000
enumeration
HITACHI HF3000
enumeration
JEOL 100CX
enumeration
JEOL 1010
enumeration
JEOL 1200
enumeration
JEOL 1200EX
enumeration
JEOL 1200EXII
enumeration
JEOL 1230
enumeration
JEOL 1400
enumeration
JEOL 2000EX
enumeration
JEOL 2000EXII
enumeration
JEOL 2010
enumeration
JEOL 2010F
enumeration
JEOL 2010HC
enumeration
JEOL 2010HT
enumeration
JEOL 2010UHR
enumeration
JEOL 2011
enumeration
JEOL 2100
enumeration
JEOL 2100F
enumeration
JEOL 2200FS
enumeration
JEOL 2200FSC
enumeration
JEOL 3000SFF
enumeration
JEOL 3100FEF
enumeration
JEOL 3100FFC
enumeration
JEOL 3200FS
enumeration
JEOL 3200FSC
enumeration
JEOL 4000
enumeration
JEOL 4000EX
enumeration
JEOL CRYO ARM 200
enumeration
JEOL CRYO ARM 300
enumeration
JEOL KYOTO-3000SFF
enumeration
TFS GLACIOS
enumeration
TFS KRIOS
enumeration
TFS TALOS
enumeration
TFS TALOS L120C
enumeration
TFS TALOS F200C
enumeration
ZEISS LEO912
enumeration
ZEISS LIBRA120PLUS
enumeration
OTHER
Used by
Source
<xs:simpleType name= "microscopeType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "FEI MORGAGNI" />
<xs:enumeration value= "FEI POLARA 300" />
<xs:enumeration value= "FEI TALOS ARCTICA" />
<xs:enumeration value= "FEI TECNAI 10" />
<xs:enumeration value= "FEI TECNAI 12" />
<xs:enumeration value= "FEI TECNAI 20" />
<xs:enumeration value= "FEI TECNAI ARCTICA" />
<xs:enumeration value= "FEI TECNAI F20" />
<xs:enumeration value= "FEI TECNAI F30" />
<xs:enumeration value= "FEI TECNAI SPHERA" />
<xs:enumeration value= "FEI TECNAI SPIRIT" />
<xs:enumeration value= "FEI TITAN" />
<xs:enumeration value= "FEI TITAN KRIOS" />
<xs:enumeration value= "FEI/PHILIPS CM10" />
<xs:enumeration value= "FEI/PHILIPS CM12" />
<xs:enumeration value= "FEI/PHILIPS CM120T" />
<xs:enumeration value= "FEI/PHILIPS CM200FEG" />
<xs:enumeration value= "FEI/PHILIPS CM200FEG/SOPHIE" />
<xs:enumeration value= "FEI/PHILIPS CM200FEG/ST" />
<xs:enumeration value= "FEI/PHILIPS CM200FEG/UT" />
<xs:enumeration value= "FEI/PHILIPS CM200T" />
<xs:enumeration value= "FEI/PHILIPS CM300FEG/HE" />
<xs:enumeration value= "FEI/PHILIPS CM300FEG/ST" />
<xs:enumeration value= "FEI/PHILIPS CM300FEG/T" />
<xs:enumeration value= "FEI/PHILIPS EM400" />
<xs:enumeration value= "FEI/PHILIPS EM420" />
<xs:enumeration value= "HITACHI EF2000" />
<xs:enumeration value= "HITACHI H-9500SD" />
<xs:enumeration value= "HITACHI H3000 UHVEM" />
<xs:enumeration value= "HITACHI H7600" />
<xs:enumeration value= "HITACHI HF2000" />
<xs:enumeration value= "HITACHI HF3000" />
<xs:enumeration value= "JEOL 100CX" />
<xs:enumeration value= "JEOL 1010" />
<xs:enumeration value= "JEOL 1200" />
<xs:enumeration value= "JEOL 1200EX" />
<xs:enumeration value= "JEOL 1200EXII" />
<xs:enumeration value= "JEOL 1230" />
<xs:enumeration value= "JEOL 1400" />
<xs:enumeration value= "JEOL 2000EX" />
<xs:enumeration value= "JEOL 2000EXII" />
<xs:enumeration value= "JEOL 2010" />
<xs:enumeration value= "JEOL 2010F" />
<xs:enumeration value= "JEOL 2010HC" />
<xs:enumeration value= "JEOL 2010HT" />
<xs:enumeration value= "JEOL 2010UHR" />
<xs:enumeration value= "JEOL 2011" />
<xs:enumeration value= "JEOL 2100" />
<xs:enumeration value= "JEOL 2100F" />
<xs:enumeration value= "JEOL 2200FS" />
<xs:enumeration value= "JEOL 2200FSC" />
<xs:enumeration value= "JEOL 3000SFF" />
<xs:enumeration value= "JEOL 3100FEF" />
<xs:enumeration value= "JEOL 3100FFC" />
<xs:enumeration value= "JEOL 3200FS" />
<xs:enumeration value= "JEOL 3200FSC" />
<xs:enumeration value= "JEOL 4000" />
<xs:enumeration value= "JEOL 4000EX" />
<xs:enumeration value= "JEOL CRYO ARM 200" />
<xs:enumeration value= "JEOL CRYO ARM 300" />
<xs:enumeration value= "JEOL KYOTO-3000SFF" />
<xs:enumeration value= "TFS GLACIOS" />
<xs:enumeration value= "TFS KRIOS" />
<xs:enumeration value= "TFS TALOS" />
<xs:enumeration value= "TFS TALOS L120C" />
<xs:enumeration value= "TFS TALOS F200C" />
<xs:enumeration value= "ZEISS LEO912" />
<xs:enumeration value= "ZEISS LIBRA120PLUS" />
<xs:enumeration value= "OTHER" />
</xs:restriction>
</xs:simpleType>
Simple Type specimenHolderType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
FEI TITAN KRIOS AUTOGRID HOLDER
enumeration
GATAN HELIUM
enumeration
GATAN LIQUID NITROGEN
enumeration
HOME BUILD
enumeration
JEOL
enumeration
JEOL 3200FSC CRYOHOLDER
enumeration
PHILIPS ROTATION HOLDER
enumeration
SIDE ENTRY, EUCENTRIC
enumeration
JEOL CRYOSPECPORTER
enumeration
OTHER
Used by
Source
<xs:simpleType name= "specimenHolderType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "FEI TITAN KRIOS AUTOGRID HOLDER" />
<xs:enumeration value= "GATAN HELIUM" />
<xs:enumeration value= "GATAN LIQUID NITROGEN" />
<xs:enumeration value= "HOME BUILD" />
<xs:enumeration value= "JEOL" />
<xs:enumeration value= "JEOL 3200FSC CRYOHOLDER" />
<xs:enumeration value= "PHILIPS ROTATION HOLDER" />
<xs:enumeration value= "SIDE ENTRY, EUCENTRIC" />
<xs:enumeration value= "JEOL CRYOSPECPORTER" />
<xs:enumeration value= "OTHER" />
</xs:restriction>
</xs:simpleType>
Complex Type accVoltType
Complex Type eWindowType
Complex Type imgScanType
Simple Type scannerType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
n/a
enumeration
CREO EVERSMART SUPREME
enumeration
EIKONIX IEEE 488
enumeration
EMIL 10
enumeration
IMACON
enumeration
NIKON SUPER COOLSCAN 9000
enumeration
NIKON SUPER COOLSCAN 8000
enumeration
NIKON SUPER COOLSCAN 5000
enumeration
NIKON SUPER COOLSCAN 4000
enumeration
NIKON COOLSCAN
enumeration
OPTRONICS
enumeration
PATCHWORK DENSITOMETER
enumeration
PERKIN ELMER
enumeration
PRIMESCAN
enumeration
TEMSCAN
enumeration
ZEISS SCAI
enumeration
OTHER
Used by
Source
<xs:simpleType name= "scannerType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "n/a" />
<xs:enumeration value= "CREO EVERSMART SUPREME" />
<xs:enumeration value= "EIKONIX IEEE 488" />
<xs:enumeration value= "EMIL 10" />
<xs:enumeration value= "IMACON" />
<xs:enumeration value= "NIKON SUPER COOLSCAN 9000" />
<xs:enumeration value= "NIKON SUPER COOLSCAN 8000" />
<xs:enumeration value= "NIKON SUPER COOLSCAN 5000" />
<xs:enumeration value= "NIKON SUPER COOLSCAN 4000" />
<xs:enumeration value= "NIKON COOLSCAN" />
<xs:enumeration value= "OPTRONICS" />
<xs:enumeration value= "PATCHWORK DENSITOMETER" />
<xs:enumeration value= "PERKIN ELMER" />
<xs:enumeration value= "PRIMESCAN" />
<xs:enumeration value= "TEMSCAN" />
<xs:enumeration value= "ZEISS SCAI" />
<xs:enumeration value= "OTHER" />
</xs:restriction>
</xs:simpleType>
Complex Type samplSizeType
Complex Type fittingType
Complex Type pdbidList2Type
Simple Type refProtocolType
Simple Type refSpaceType
Complex Type smplPrepType
Simple Type specimenType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
particle
enumeration
filament
enumeration
twoDArray
enumeration
threeDArray
enumeration
helicalArray
enumeration
tissue
enumeration
cell
Used by
Source
<xs:simpleType name= "specimenType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "particle" />
<xs:enumeration value= "filament" />
<xs:enumeration value= "twoDArray" />
<xs:enumeration value= "threeDArray" />
<xs:enumeration value= "helicalArray" />
<xs:enumeration value= "tissue" />
<xs:enumeration value= "cell" />
</xs:restriction>
</xs:simpleType>
Complex Type samplConcType
Complex Type bufferType
Complex Type twoDxtalParamType
Complex Type lengthType
Complex Type anglType
Simple Type plGrpType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
P 1
enumeration
P 2
enumeration
P 1 2
enumeration
P 1 21
enumeration
C 1 2
enumeration
P 2 2 2
enumeration
P 2 2 21
enumeration
P 2 21 21
enumeration
C 2 2 2
enumeration
P 4
enumeration
P 4 2 2
enumeration
P 4 21 2
enumeration
P 3
enumeration
P 3 1 2
enumeration
P 3 2 1
enumeration
P 6
enumeration
P 6 2 2
Used by
Source
<xs:simpleType name= "plGrpType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "P 1" />
<xs:enumeration value= "P 2" />
<xs:enumeration value= "P 1 2" />
<xs:enumeration value= "P 1 21" />
<xs:enumeration value= "C 1 2" />
<xs:enumeration value= "P 2 2 2" />
<xs:enumeration value= "P 2 2 21" />
<xs:enumeration value= "P 2 21 21" />
<xs:enumeration value= "C 2 2 2" />
<xs:enumeration value= "P 4" />
<xs:enumeration value= "P 4 2 2" />
<xs:enumeration value= "P 4 21 2" />
<xs:enumeration value= "P 3" />
<xs:enumeration value= "P 3 1 2" />
<xs:enumeration value= "P 3 2 1" />
<xs:enumeration value= "P 6" />
<xs:enumeration value= "P 6 2 2" />
</xs:restriction>
</xs:simpleType>
Complex Type threeDxtalParamType
Complex Type helixParamType
Simple Type handType
Complex Type processType
Simple Type methodType
Namespace
No namespace
Diagram
Type
restriction of xs:string
Facets
enumeration
twoDCrystal
enumeration
singleParticle
enumeration
tomography
enumeration
subtomogramAveraging
enumeration
helical
Used by
Source
<xs:simpleType name= "methodType" >
<xs:restriction base= "xs:string" >
<xs:enumeration value= "twoDCrystal" />
<xs:enumeration value= "singleParticle" />
<xs:enumeration value= "tomography" />
<xs:enumeration value= "subtomogramAveraging" />
<xs:enumeration value= "helical" />
</xs:restriction>
</xs:simpleType>
Complex Type reconsType
Complex Type xtal2DType
Complex Type helixType
Complex Type subTomType
Complex Type tomogrType
Simple Type pointGroupSymmetryType
Complex Type singPartType
Complex Type contactType
Complex Type layerLineType
Complex Type structFactType
Complex Type crystSizeType
Complex Type origType
Complex Type limType
Simple Type ictvIdType
Simple Type entClassType
Simple Type imgFormatType
Simple Type positiveIntegerOrNAType
Namespace
No namespace
Type
status
Properties
Facets
enumeration
REL
enumeration
HPUB
enumeration
HOLD1
enumeration
OBS
Used by
Source
<xs:attribute name= "prior" type= "status" />