data_PRD_002568
# 
_pdbx_reference_molecule.prd_id                       PRD_002568 
_pdbx_reference_molecule.name                         "Fluorinated GM1 ganglioside analogue" 
_pdbx_reference_molecule.represent_as                 branched 
_pdbx_reference_molecule.type                         Oligosaccharide 
_pdbx_reference_molecule.type_evidence_code           ? 
_pdbx_reference_molecule.class                        "Glycan component" 
_pdbx_reference_molecule.class_evidence_code          ? 
_pdbx_reference_molecule.formula                      "C49 H84 F2 N2 O27" 
_pdbx_reference_molecule.formula_weight               1171.185 
_pdbx_reference_molecule.chem_comp_id                 ? 
_pdbx_reference_molecule.release_status               REL 
_pdbx_reference_molecule.replaces                     ? 
_pdbx_reference_molecule.replaced_by                  ? 
_pdbx_reference_molecule.compound_details             "In lipid rafts, GM1 gangliosides serve a role in several signaling systems. GM1 gangliosides promote differentiation of various neuronal cells." 
_pdbx_reference_molecule.description                  "GM1 ganglioside lipids (monosialotetrahexosylgangliosides) belong to the group of gangliosides within the sphingolipids. Their structure consists of a ceramide backbone linked to an oligosaccharide unit made of five sugar molecules. In this analogue one of the five sugars is fluorinated and the ceramide backbone is replaced by an unsaturated hydrocarbon." 
_pdbx_reference_molecule.representative_PDB_id_code   9EWF 
# 
loop_
_pdbx_reference_entity_list.prd_id 
_pdbx_reference_entity_list.ref_entity_id 
_pdbx_reference_entity_list.component_id 
_pdbx_reference_entity_list.type 
_pdbx_reference_entity_list.details 
PRD_002568 1 1 branched    .     
PRD_002568 2 2 non-polymer A1H7V 
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_pdbx_reference_entity_nonpoly.prd_id          PRD_002568 
_pdbx_reference_entity_nonpoly.ref_entity_id   2 
_pdbx_reference_entity_nonpoly.name            "(2R,3S,4S,5R,6R)-6-dodecoxy-5-fluoranyl-2-(hydroxymethyl)oxane-3,4-diol" 
_pdbx_reference_entity_nonpoly.chem_comp_id    A1H7V 
_pdbx_reference_entity_nonpoly.details         . 
# 
_pdbx_reference_entity_link.prd_id              PRD_002568 
_pdbx_reference_entity_link.link_id             1 
_pdbx_reference_entity_link.link_class          PN 
_pdbx_reference_entity_link.ref_entity_id_1     1 
_pdbx_reference_entity_link.entity_seq_num_1    1 
_pdbx_reference_entity_link.comp_id_1           GAL 
_pdbx_reference_entity_link.atom_id_1           C1 
_pdbx_reference_entity_link.ref_entity_id_2     2 
_pdbx_reference_entity_link.entity_seq_num_2    . 
_pdbx_reference_entity_link.comp_id_2           A1H7V 
_pdbx_reference_entity_link.atom_id_2           O4 
_pdbx_reference_entity_link.value_order         sing 
_pdbx_reference_entity_link.component_1         1 
_pdbx_reference_entity_link.component_2         2 
_pdbx_reference_entity_link.details             . 
_pdbx_reference_entity_link.nonpoly_res_num_1   . 
_pdbx_reference_entity_link.nonpoly_res_num_2   . 
# 
loop_
_pdbx_reference_entity_poly_link.prd_id 
_pdbx_reference_entity_poly_link.ref_entity_id 
_pdbx_reference_entity_poly_link.link_id 
_pdbx_reference_entity_poly_link.atom_id_1 
_pdbx_reference_entity_poly_link.comp_id_1 
_pdbx_reference_entity_poly_link.entity_seq_num_1 
_pdbx_reference_entity_poly_link.atom_id_2 
_pdbx_reference_entity_poly_link.comp_id_2 
_pdbx_reference_entity_poly_link.entity_seq_num_2 
_pdbx_reference_entity_poly_link.value_order 
_pdbx_reference_entity_poly_link.component_id 
_pdbx_reference_entity_poly_link.details 
_pdbx_reference_entity_poly_link.insert_code_1 
_pdbx_reference_entity_poly_link.insert_code_2 
PRD_002568 1 1 O4 GAL 1 C1 NGA 2 sing 1 . . . 
PRD_002568 1 2 O3 GAL 1 C2 SIA 4 sing 1 . . . 
PRD_002568 1 3 O3 NGA 2 C1 2FG 3 sing 1 . . . 
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_pdbx_reference_entity_poly.prd_id          PRD_002568 
_pdbx_reference_entity_poly.ref_entity_id   1 
_pdbx_reference_entity_poly.db_code         . 
_pdbx_reference_entity_poly.db_name         . 
_pdbx_reference_entity_poly.type            oligosaccharide 
# 
_pdbx_reference_entity_sequence.prd_id          PRD_002568 
_pdbx_reference_entity_sequence.ref_entity_id   1 
_pdbx_reference_entity_sequence.type            saccharide 
_pdbx_reference_entity_sequence.NRP_flag        N 
# 
loop_
_pdbx_reference_entity_poly_seq.prd_id 
_pdbx_reference_entity_poly_seq.ref_entity_id 
_pdbx_reference_entity_poly_seq.num 
_pdbx_reference_entity_poly_seq.mon_id 
_pdbx_reference_entity_poly_seq.parent_mon_id 
_pdbx_reference_entity_poly_seq.hetero 
_pdbx_reference_entity_poly_seq.observed 
PRD_002568 1 1 GAL . N Y 
PRD_002568 1 2 NGA . N Y 
PRD_002568 1 3 2FG . N Y 
PRD_002568 1 4 SIA . N Y 
# 
loop_
_pdbx_prd_audit.prd_id 
_pdbx_prd_audit.date 
_pdbx_prd_audit.processing_site 
_pdbx_prd_audit.action_type 
PRD_002568 2024-04-15 .    "Create molecule" 
PRD_002568 2025-02-26 RCSB "Initial release" 
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