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    <admin>
        <current_status>
            <date>2021-04-14</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2020-02-20</deposition>
            <header_release>2020-08-05</header_release>
            <map_release>2020-08-05</map_release>
            <update>2021-04-14</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>European Research Council (ERC)</funding_body>
                <code>760067</code>
                <country>Germany</country>
            </grant_reference>
        </grant_support>
        <title>in-cell elongating expressome from Mycoplasma pneumoniae</title>
        <authors_list>
            <author>Mahamid J</author>
            <author>Xue L</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">O'Reilly FJ</author>
                    <author order="2">Xue L</author>
                    <author order="3">Graziadei A</author>
                    <author order="4">Sinn L</author>
                    <author order="5">Lenz S</author>
                    <author order="6">Tegunov D</author>
                    <author order="7">Blotz C</author>
                    <author order="8">Singh N</author>
                    <author order="9">Hagen WJH</author>
                    <author order="10">Cramer P</author>
                    <author order="11">Stulke J</author>
                    <author order="12">Mahamid J</author>
                    <author order="13">Rappsilber J</author>
                    <title>In-cell architecture of an actively transcribing-translating expressome.</title>
                    <journal_abbreviation>Science</journal_abbreviation>
                    <country>US</country>
                    <volume>369</volume>
                    <first_page>554</first_page>
                    <last_page>557</last_page>
                    <year>2020</year>
                    <external_references type="PUBMED">32732422</external_references>
                    <external_references type="DOI">doi:10.1126/science.abb3758</external_references>
                    <external_references type="ISSN">1095-9203</external_references>
                    <external_references type="CSD">0038</external_references>
                    <external_references type="ASTM">SCIEAS</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-10679</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>wild-type Mycoplasma pneumoniae M129 cells</name>
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            <cell_supramolecule supramolecule_id="1">
                <name>wild-type Mycoplasma pneumoniae M129 cells</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="272634">Mycoplasma pneumoniae M129</organism>
                </natural_source>
            </cell_supramolecule>
        </supramolecule_list>
    </sample>
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        <structure_determination structure_determination_id="1">
            <method>subtomogramAveraging</method>
            <aggregation_state>cell</aggregation_state>
            <specimen_preparation_list>
                <subtomogram_averaging_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                        <details>modified Hayflick medium as described in Halbedel, Hames, and Stulke 2004</details>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/1</model>
                        <material>GOLD</material>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE-PROPANE</cryogen_name>
                        <chamber_humidity units="percentage">45</chamber_humidity>
                        <instrument>HOMEMADE PLUNGER</instrument>
                    </vitrification>
                </subtomogram_averaging_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <subtomogram_averaging_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <calibrated_defocus_min units="µm">1.5</calibrated_defocus_min>
                    <calibrated_defocus_max units="µm">4.5</calibrated_defocus_max>
                    <calibrated_magnification>81000.0</calibrated_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
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                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <average_electron_dose_per_image units="e/Å^2">2.9</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </subtomogram_averaging_microscopy>
            </microscopy_list>
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                <image_recording_id>1</image_recording_id>
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                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="Å">8.5</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0.7</version>
                        </software>
                    </software_list>
                    <details>Refinements performed with spherical mask generated in RELION. 
Postprocessing performed with tight mask.</details>
                    <number_subtomograms_used>2952</number_subtomograms_used>
                </final_reconstruction>
                <extraction>
                    <number_tomograms>352</number_tomograms>
                    <number_images_used>73858</number_images_used>
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                        <software>
                            <name>Warp</name>
                            <version>1.0.6</version>
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                <ctf_correction>
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                        <software>
                            <name>Warp</name>
                            <version>1.0.6</version>
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                    </software_list>
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                <final_three_d_classification>
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                        <software>
                            <name>RELION</name>
                            <version>3.0.7</version>
                        </software>
                    </software_list>
                </final_three_d_classification>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
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                        <software>
                            <name>RELION</name>
                            <version>3.0.7</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
            </subtomogram_averaging_processing>
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    </structure_determination_list>
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        <file>emd_10679.map.gz</file>
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            <space_group>1</space_group>
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        <label>::::EMDATABANK.org::::EMD-10679::::</label>
        <annotation_details>In-cell expressome from Mycoplasma pneumoniae</annotation_details>
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    <interpretation>
        <segmentation_list>
            <segmentation>
                <file>emd_10679_msk_1.map</file>
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