<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_9/emdb.xsd" emdb_id="EMD-10671" version="3.0.1.9">
    <admin>
        <current_status>
            <date>2020-07-22</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2020-02-11</deposition>
            <header_release>2020-03-04</header_release>
            <map_release>2020-03-04</map_release>
            <update>2020-07-22</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>European Research Council (ERC)</funding_body>
                <code>726368</code>
                <country>European Union</country>
            </grant_reference>
        </grant_support>
        <title>Amyloid fibril structure of islet amyloid polypeptide - polymorph 3</title>
        <authors_list>
            <author>Roeder C</author>
            <author>Kupreichyk T</author>
            <author>Gremer L</author>
            <author>Schaefer LU</author>
            <author>Pothula KR</author>
            <author>Ravelli RBG</author>
            <author>Willbold D</author>
            <author>Schroder GF</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Roder C</author>
                    <author order="2">Kupreichyk T</author>
                    <author order="3">Gremer L</author>
                    <author order="4">Schafer LU</author>
                    <author order="5">Pothula KR</author>
                    <author order="6">Ravelli RBG</author>
                    <author order="7">Willbold D</author>
                    <author order="8">Hoyer W</author>
                    <author order="9">Schroder GF</author>
                    <title>Cryo-EM structure of islet amyloid polypeptide fibrils reveals similarities with amyloid-beta fibrils.</title>
                    <journal_abbreviation>Nat.Struct.Mol.Biol.</journal_abbreviation>
                    <country>US</country>
                    <volume>27</volume>
                    <first_page>660</first_page>
                    <last_page>667</last_page>
                    <year>2020</year>
                    <external_references type="PUBMED">32541895</external_references>
                    <external_references type="DOI">doi:10.1038/s41594-020-0442-4</external_references>
                    <external_references type="ISSN">1545-9985</external_references>
                </journal_citation>
            </primary_citation>
            <secondary_citation>
                <journal_citation published="true">
                    <author order="10">Roeder C</author>
                    <author order="11">Kupreichyk T</author>
                    <author order="12">Gremer L</author>
                    <author order="13">Schaefer LU</author>
                    <author order="14">Pothula KR</author>
                    <author order="15">Ravelli RBG</author>
                    <author order="16">Willbold D</author>
                    <author order="17">Hoyer W</author>
                    <author order="18">Schroder GF</author>
                    <title>Amyloid fibril structure of islet amyloid polypeptide by cryo-electron microscopy reveals similarities with amyloid beta</title>
                    <journal_abbreviation>Biorxiv</journal_abbreviation>
                    <country>US</country>
                    <year>2020</year>
                    <external_references type="DOI">doi:10.1101/2020.02.11.944546</external_references>
                </journal_citation>
            </secondary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-10669</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>10669 is the same peptide in polymorph 1</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-10670</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>10670 is the same peptide in polymorph 2</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-10671</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Amyloid fibril of the islet amyloid polypeptide (IAPP)</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Amyloid fibril of the islet amyloid polypeptide (IAPP)</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>The fibril consists of IAPP monomers.</details>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="kDa/nm">10.6</theoretical>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>islet amyloid polypeptide</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>KCNTATCATQRLANFLVHSSNNFGAILSSTNVGSNTY</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <buffer>
                        <ph>6</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                        <details></details>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI ARCTICA</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <specialist_optics>
                        <phase_plate>OTHER</phase_plate>
                    </specialist_optics>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON III (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <number_grids_imaged>1</number_grids_imaged>
                            <number_real_images>1330</number_real_images>
                            <average_exposure_time units="s">46.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/Å^2">41.4</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="Å">2.323</delta_z>
                            <delta_phi units="deg">179.47</delta_phi>
                            <axial_symmetry>C1</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">8.1</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0.5</version>
                        </software>
                    </software_list>
                    <number_images_used>4591</number_images_used>
                </final_reconstruction>
                <startup_model type_of_model="OTHER">
                    <details>noise filled cylinder</details>
                </startup_model>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </final_angle_assignment>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="42593">
        <file>emd_10671.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>220</col>
            <row>220</row>
            <sec>220</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>220</x>
            <y>220</y>
            <z>220</z>
        </spacing>
        <cell>
            <a units="Å">205.7</a>
            <b units="Å">205.7</b>
            <c units="Å">205.7</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.008407407</minimum>
            <maximum>0.017573582</maximum>
            <average>0.0011355984</average>
            <std>0.0030118295</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">0.935</x>
            <y units="Å">0.935</y>
            <z units="Å">0.935</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.008</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-10671::::</label>
    </map>
    <interpretation>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="42593">
                <file>emd_10671_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>220</col>
                    <row>220</row>
                    <sec>220</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>220</x>
                    <y>220</y>
                    <z>220</z>
                </spacing>
                <cell>
                    <a units="Å">205.7</a>
                    <b units="Å">205.7</b>
                    <c units="Å">205.7</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.014066297</minimum>
                    <maximum>0.015782474</maximum>
                    <average>0.00014284649</average>
                    <std>0.0016823935</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.935</x>
                    <y units="Å">0.935</y>
                    <z units="Å">0.935</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-10671::::</label>
                <annotation_details>half map 2</annotation_details>
            </half_map>
            <half_map format="CCP4" size_kbytes="42593">
                <file>emd_10671_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>220</col>
                    <row>220</row>
                    <sec>220</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>220</x>
                    <y>220</y>
                    <z>220</z>
                </spacing>
                <cell>
                    <a units="Å">205.7</a>
                    <b units="Å">205.7</b>
                    <c units="Å">205.7</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.014066297</minimum>
                    <maximum>0.015782474</maximum>
                    <average>0.00014284649</average>
                    <std>0.0016823935</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.935</x>
                    <y units="Å">0.935</y>
                    <z units="Å">0.935</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-10671::::</label>
                <annotation_details>half map 1</annotation_details>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
