2026-08-12 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update STRUCTURE_SUMMARY atom_site chem_comp database_2 database_PDB_caveat entity pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_unobs_or_zero_occ_atoms pdbx_validate_chiral pdbx_validate_close_contact struct_site struct_site_gen _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.formula_weight _entity.pdbx_description _pdbx_entity_nonpoly.comp_id _pdbx_entity_nonpoly.name _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_comp_id_2 _struct_site.details _struct_site.pdbx_auth_comp_id _struct_site_gen.auth_comp_id _struct_site_gen.label_comp_id DATA_COLLECTION chem_comp_atom chem_comp_bond REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY em_admin pdbx_entry_details pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_validate_close_contact struct_conn struct_conn_type _em_admin.last_update _pdbx_entry_details.has_protein_modification PDBj PDBj 2019-11-02 2020-02-19 2020-02-19 2026-08-12 cryo-EM structure of cyanobacteria NDH-1LdelV complex Zhang C Shuai J photosystem I, cyclic electron transfer, PHOTOSYNTHESIS Zhang C Shuai J Ran Z Zhao J Wu Z Liao R Wu J Ma W Lei M Structural insights into NDH-1 mediated cyclic electron transfer. Nat Commun UK 11 888 888 2020 32060291 doi:10.1038/s41467-020-14732-z 2041-1723 EMD-0849 other EM volume 6l7p FULLOVERLAP EMDB EMD-0849 other EM volume EMDB EMD-0850 associated EM volume
cryo-EM structure of cyanobacteria NDH-1LdelV complex
 NDH-1LDelV NDH-1LDelV 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 Thermosynechococcus elongatus BP-1 NAD(P)H-quinone oxidoreductase subunit 1 Thermosynechococcus elongatus BP-1 BP-1 0.04056598399999999 1 LEVO MESGIDLQGQFISALQSLGLSHDLAKLLWLPLPMLMMLIVATVGVLVAVWLERKISAAVQQRIGPEYIGPLGILAPLADG LKLIFKEDVLPANSDRWLFTLGPAVVVIPVFLSYIIVPFGQNLLISNLAMGVFLWIALSSIAPIGLLMAGYASNNKYSLL GGLRAAAQSISYEIPLALAVLAVAMMSNGLGTVEIVEQQSQYGILSWNVWRQPIGFLVFWIAALAECERLPFDLPEAEEE LVAGYQTEYAGMKFALFYLGAYVNLVLSALLVSVLYFGGWSFPIPLETIANLLGVSETNPFLQIAFAVLGITMTLIKAYF FVFLAILLRWTVPRVRIDQLLDLGWKFLLPVGLVNLLLTAGLKLAFPVAFGG Q8DL32 7.1.1.- NAD(P)H-quinone oxidoreductase subunit 2 Thermosynechococcus elongatus BP-1 BP-1 0.055168542999999994 1 LEVO MDLVTLAGQLNAGTILPETILIVTLLVVLLADLIQGRQADRWTPYFAIVGLGGAIATMIPLWTQPATISFFGSFISDHLS LFFRGLIALSALGTILMSIRYVEQTGSSLGEFMTILLTATVGGMFIAGAQELVFIFVALETLSIASYLLTGYTKRDSRSN EAALKYLLIGAASSAIFLYGSSLLYGLSGGHTQLPAIAQALSSESLGLVVALVFVIAGISFKISAVPFHQWTPDVYEGAP TPVVAFLSVGSKAAGFALAIRFLTLAFPSVTDQWQLIFTVLAILSMILGNVVALAQTSMKRMLAYSSIGQAGFVMIGFVV GTEAGYASMLFYLLVYLFMNLGAFTCVILFSLRTGTDQISEYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFW AGWQAGAYGLVLLGLLTSVISIYYYIRVVKMMVVKEPQEMSEAVRNYPEVSWSSFGLRPLQVGLVMTVIATSLAGILANP LFNLVNTAVWDVPQLANQPTVMEVAYQALSPAGKS Q8DMR6 7.1.1.- NAD(P)H-quinone oxidoreductase subunit 3 Thermosynechococcus elongatus BP-1 BP-1 0.015013918999999999 1 LEVO MVAIPRLRDTATVFVLSGYEYFLGFLIICSLVPVLALAASALLRPKSGRMIRLTTYESGMEPIGGAWIQFNVRYYMFALV FVIFDVETVFLYPWAVAFHQLGLLAFIEALIFIAILVVALVYAWRKRALEWS Q8DJ02 7.1.1.- NAD(P)H-quinone oxidoreductase chain 4 1 Thermosynechococcus elongatus BP-1 BP-1 0.057847504 1 LEVO MSTFPWLTTIILFPIVAALAIPFIPDPTGKGRPIRWYALAVGLIDFALIVYAFTNFYDLNTPGMQLWESYDWIPEIGLRW SVGADGLSMPLILLTGFITTLAILAAWPVTLKPRLFYFLMLAMYGGQIAVFAVQDMLVFFLAWELELIPVYLLLAIWGGH KRQYAATKFILYTAGSSLFILVAGLAMAFYGDTVSFDMQTLAAKDYALGFQLLVYAGFLVAYGVKLPIVPLHTWLPDAHG EATAPVHMLLAGILLKMGGYALIRMNVDMLPAAHAKFAPVLVILGVVNIIYAALTSYAQRNLKRKIAYSSISHIGFVLIG IASFTNLGMSGAVLQMVSHGLIGASLFFLVGATYDRTHTLILEEMGGVGQKMKKIFAMFTACSLASLALPGMSGFVAELM VFIGFATSDAYSLPFRVIVVFLAAVGVILTPIYLLSMLREIFYGPENKELVEHEALVDAEPREVFIIACLLVPIIGIGLY PKLLTQIYDATTGQVIARAREVLPTLAQQTEQPLGILPMVAPQLKANAQ Q8DKY0 7.1.1.- NAD(P)H-quinone oxidoreductase subunit 4L Thermosynechococcus elongatus BP-1 BP-1 0.011140264999999998 1 LEVO MQLTYVLILAALLFCIGIYGLVTSRNAVRVLMSIELLLNAVNLNLIGFANYLDGQQIKGQVFAVFVITVAAAEAAVGLAI ILAIYRNRDTVDMEKFNLLKW Q8DL29 7.1.1.- NADH dehydrogenase subunit 5 Thermosynechococcus elongatus BP-1 BP-1 0.072025352 1 LEVO MEPLYQYAWLIPVLPLLGALIVGFGLIAFSETTSKLRRPSAIFIMALMAIAMGHSLTLFWSQVQGHLPYTQMIEWAAAGN LHIAMGYVIDPLAALMLVIVTTVAFLVMLYSDGYMAHDPGYVRFFAYLSLFGSSMLGLVVSPNLVQVYIFWELVGMCSYL LIGFWYDRKSAAEAAQKAFVTNRVGDFGLLLGMVGLFWATGTFDFAGMGDRLTELVNTGLLSPSLAAILAILVFLGPVAK SAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLIARMFPVFEQLPQVMTTIAWTGAFTAFMGATIAITQNDIKKSLA YSTISQLGYMVMGMGVGAYSAGLFHLMTHAYFKAMLFLGSGSVIHSMEGVVGHNPDLAQDMRYMGGLRKYMPITGATFLV GCLAISGVPPFAGFWSKDEILGAVFHANPAMWLLTWLTAGLTAFYMFRMYFMTFEGKFRNVPPERQEHHDHHSHHAAVPH ESPWTMTLPLVVLAIPSTLIGFVGTPFNNLFEVFIHAPGEEKVAEHAVDLTEFLILGGSSVGIGLMGITVAYLMYLKGTP SPQAIAKAIQPLYQFSLHKWYFDELYEAVFIKGCRRLARQVLEVDYNVVDGVVNLTGFVTMVTGEGLKYLQNGRAQFYAL IVLLAVLGFVIFSVQT Q8DKX9 NADH-quinone oxidoreductase subunit J Thermosynechococcus elongatus BP-1 BP-1 0.021580567999999998 1 LEVO MDLATLTQTITFFALAAAVIIAALGVVLLDNVVYSAFLLGGVFLSIAGLYILMNADFVSAAQILIYVGAVNVLILFAIML VNKRETYTPVPGRWLRQGGAAVVSLGVFALLTKMILQTPWQLSSVPPTPDSITTIGQHFFSDFLLPFELASVLLLMALIG AVVLARRELVLEPEPILGEEVVPPLELPERPREPVALSEK Q8DL30 7.1.1.- NAD(P)H-quinone oxidoreductase subunit H Thermosynechococcus elongatus BP-1 BP-1 0.045271184 1 LEVO MPKIETRTEPMVINMGPHHPSMHGVLRLMVTLDGEDVIDCEPVIGYLHRGMEKIAENRTNIMFIPYVSRWDYAAGMFNEA VTVNAPEKLAGIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREYIYDLFEAATGMRFINNNYFR IGGVAADLTYGWVTKCRDFCDYFLPKVDEYERLITNNPIFVRRLQGVGKISREEAINWGLSGPMLRASGVKWDLRKVDHY ECYDDFDWDVPVATEGDCLARYIVRIQEMRESVKIIRQALDGLPGGPYENLEAKRMLEGAKSEWNGFDYQYIGKKLSPTF KIPKGEHYVRVESGKGELGIYLIGDDNVFPWRWKIRPPDFNNLQVLPQLLKGMKVADIVAILGSIDVIMGSVDR Q8DJD9 7.1.1.- NAD(P)H-quinone oxidoreductase subunit I Thermosynechococcus elongatus BP-1 BP-1 0.022444800999999997 1 LEVO MKFLNQITNYAKEAVQSAKYIGQGLSVTFDHMRRRPITVQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVV DWVFNKELKKKELKHYSIDFGVCIFCANCVEYCPTNCLSVTEEYELATYDRHELNYDSVAMGRIPYKVTQDPMVTPIREF AYLPAGVMSGHDLPAGAQRAGERPEAIANTAKSSEN Q8DL31 7.1.1.- NAD(P)H-quinone oxidoreductase subunit J Thermosynechococcus elongatus BP-1 BP-1 0.019363789 1 LEVO MSDTPEAPIVEAGPVGRLLQSQNLSVESLGRDASGVEMIKVDRDRLLAVCQTLYADGFNYLRCQAAYDSGPGQDLVSTYH LIKLSDNADRPPEVRIKVFVPRDDPRVPSVYWIWKTADWQERESYDMFGIVYEGHPNLKRILMPEDWVGWPLRKDYITPD FYELQEAY Q8DJ01 7.1.1.- NAD(P)H-quinone oxidoreductase subunit K Thermosynechococcus elongatus BP-1 BP-1 0.025766998 1 LEVO MTNTTSPAILNPIARPEVPQELAENIILTSLNDVYDWARLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVPRNSPRQ ADLIITSGTITMKMAPALVRLYEQMPSPKYVIAMGACTITGGMFSSDSYSAVRGVDKLIPVDVYLPGCPPRPEAIMDAIV KLRKKIANEHINERGNLAQTHRLFTAKHKMKPVPPILTGQYLNAPSRQAPPPALAAAMGIAVPALGEAVSETTSVAE Q8DKZ4 7.1.1.- NAD(P)H-quinone oxidoreductase subunit L Thermosynechococcus elongatus BP-1 BP-1 0.008575137 1 LEVO MAVSTELLVLGVYGALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFRPQPRSLNS Q8DKZ3 7.1.1.- NAD(P)H-quinone oxidoreductase subunit M Thermosynechococcus elongatus BP-1 BP-1 0.012584056 1 LEVO MLLKSTTRHVHIYAGHVVDGEVHPDTETLTLNVDPDNELEWNEAALAKVEAKFRELVANAAGEDLTEYNLRRIGSDLEHF IRSLLMQGEIGYNLNSRVRNYSLGIPRVNHS Q8DLN5 7.1.1.- NAD(P)H-quinone oxidoreductase subunit N Thermosynechococcus elongatus BP-1 BP-1 0.016656182 1 LEVO MGLLAGYQFVKDLESAGALALFVPPEGGFEGRYQRRLRSKGYTTLPMSAPGLGDLAAYLTQEHGIRPAHTGKEDIRVYFQ PPLVTYHLENLPPNAKGLVLWLIDGKRLSKQEFAYLAQLTQTLPKFKVVVEVGGDRVVRWEPLADWVAAA Q8DJU2 7.1.1.- NAD(P)H-quinone oxidoreductase subunit O Thermosynechococcus elongatus BP-1 BP-1 0.007877076 1 LEVO MAIKKGDLVKVVAEKLANSLEALASDHRYPPYLFEGRGEVVDIRGDYAQIKFPVPTPTVWLRLDQLEVAQ Q8DMU4 7.1.1.- NAD(P)H-quinone oxidoreductase subunit P Thermosynechococcus elongatus BP-1 BP-1 0.0048786490000000005 1 LEVO MDAVISVKPILLAMTPVFILLCLFFGTRNGFYDTDQYHGNGSAH NAD(P)H-quinone oxidoreductase subunit Q Thermosynechococcus elongatus BP-1 BP-1 0.004844698 1 LEVO MATDFNRGIMKFDGADSPAMIAISAVLILGFIAGLIWWALHTAYA Tlr0636 protein Thermosynechococcus elongatus BP-1 BP-1 0.012462558999999998 1 LEVO MIRPIADTYPLLPLSKAQMGQRQEIINSHKRLWDKTMATDLIMTILPGMTVKVTNPNDTYYQFQGIVQRITDGKVAVLFE GGNWDKLVTFQASELEPVVVTPKEKAKAKK Q8DL61 BETA-CAROTENE 0.000536873 3 BCR 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 9 LHG DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 2 DGD Digitonin 0.0012293119999999998 44 AJP PHYLLOQUINONE 0.000450696 1 PQN 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 0.0007951159999999999 4 SQD IRON/SULFUR CLUSTER 0.00035163999999999996 3 SF4 singleParticle particle 6.0 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI FALCON III (4k x 4k) 40.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 3.6 FSC 0.143 CUT-OFF 439946 COMMON LINE MAXIMUM LIKELIHOOD emd_0850.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 327.0 327.0 327.0 90.0 90.0 90.0 X Y Z -0.1815937 0.52937794 0.00056960987 0.009655327 1.09 1.09 1.09 0.0403 AUTHOR None