<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_5/emdb.xsd" emdb_id="EMD-0597" version="3.0.1.5">
    <admin>
        <current_status>
            <date>2019-06-19</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2019-02-21</deposition>
            <header_release>2019-03-20</header_release>
            <map_release>2019-03-20</map_release>
            <update>2019-06-19</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Human Genome Research Institute</funding_body>
                <code>R01-GM065050</code>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>Structure of a drug-like molecule stalled ribosome nascent chain complex (PCSK9-RNC) in rotated state with AA tRAN and PE tRNA</title>
        <authors_list>
            <author>Li W</author>
            <author>Cate JHD</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Li W</author>
                    <author order="2">Ward FR</author>
                    <author order="3">McClure KF</author>
                    <author order="4">Chang ST</author>
                    <author order="5">Montabana E</author>
                    <author order="6">Liras S</author>
                    <author order="7">Dullea RG</author>
                    <author order="8">Cate JHD</author>
                    <title>Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.</title>
                    <journal_abbreviation>Nat.Struct.Mol.Biol.</journal_abbreviation>
                    <country>US</country>
                    <volume>26</volume>
                    <first_page>501</first_page>
                    <last_page>509</last_page>
                    <year>2019</year>
                    <external_references type="PUBMED">31160784</external_references>
                    <external_references type="DOI">doi:10.1038/s41594-019-0236-8</external_references>
                    <external_references type="ISSN">1545-9985</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-0597</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-0598</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-0596</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-0599</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-0600</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-0601</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>6om7</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Drug-like molecule PF846 stalled human ribosome nascent chain complex, PCSK9-RNC in rotated state with AA tRNA and PE tRNA</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Drug-like molecule PF846 stalled human ribosome nascent chain complex, PCSK9-RNC in rotated state with AA tRNA and PE tRNA</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                    <recombinant_cell>HeLa</recombinant_cell>
                </recombinant_expression>
                <molecular_weight>
                    <theoretical units="MDa">4.3</theoretical>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.8</ph>
                    </buffer>
                    <grid>
                        <details>unspecified</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">4</chamber_temperature>
                        <details></details>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">50.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">3.72</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>9564</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="318029">
        <file>emd_0597.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>430</col>
            <row>430</row>
            <sec>430</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>430</x>
            <y>430</y>
            <z>430</z>
        </spacing>
        <cell>
            <a units="Å">524.60004</a>
            <b units="Å">524.60004</b>
            <c units="Å">524.60004</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.06245838</minimum>
            <maximum>0.11255686</maximum>
            <average>0.00044033065</average>
            <std>0.006970685</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.22</x>
            <y units="Å">1.22</y>
            <z units="Å">1.22</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.022</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-0597::::</label>
        <annotation_details>PF846 stalled human ribosome nascent chain complex (PCSK9-RNC) in rotated state with AA tRNA and PE tRNA; map is sharpened.</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_space>REAL</refinement_space>
                <overall_bvalue>91.0</overall_bvalue>
            </modelling>
        </modelling_list>
        <additional_map_list>
            <additional_map format="CCP4" size_kbytes="318029">
                <file>emd_0597_additional.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>430</col>
                    <row>430</row>
                    <sec>430</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>430</x>
                    <y>430</y>
                    <z>430</z>
                </spacing>
                <cell>
                    <a units="Å">524.60004</a>
                    <b units="Å">524.60004</b>
                    <c units="Å">524.60004</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.018077439</minimum>
                    <maximum>0.046085056</maximum>
                    <average>0.00046038718</average>
                    <std>0.003027126</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.22</x>
                    <y units="Å">1.22</y>
                    <z units="Å">1.22</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-0597::::</label>
                <annotation_details>PF846 stalled human ribosome nascent chain complex (PCSK9-RNC) in rotated state with AA tRNA and PE tRNA, map is not sharpened.</annotation_details>
            </additional_map>
        </additional_map_list>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="318029">
                <file>emd_0597_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>430</col>
                    <row>430</row>
                    <sec>430</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>430</x>
                    <y>430</y>
                    <z>430</z>
                </spacing>
                <cell>
                    <a units="Å">524.60004</a>
                    <b units="Å">524.60004</b>
                    <c units="Å">524.60004</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.07964172</minimum>
                    <maximum>0.110560566</maximum>
                    <average>0.00044946137</average>
                    <std>0.01013388</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.22</x>
                    <y units="Å">1.22</y>
                    <z units="Å">1.22</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>EMDB</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-0597::::</label>
                <annotation_details>Half map of PF846 stalled human ribosome nascent chain complex (PCSK9-RNC) in rotated state with AA tRNA and PE tRNA.</annotation_details>
            </half_map>
            <half_map format="CCP4" size_kbytes="318029">
                <file>emd_0597_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>430</col>
                    <row>430</row>
                    <sec>430</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>430</x>
                    <y>430</y>
                    <z>430</z>
                </spacing>
                <cell>
                    <a units="Å">524.60004</a>
                    <b units="Å">524.60004</b>
                    <c units="Å">524.60004</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.07481344</minimum>
                    <maximum>0.10960023</maximum>
                    <average>0.00043119997</average>
                    <std>0.009937811</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.22</x>
                    <y units="Å">1.22</y>
                    <z units="Å">1.22</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>EMDB</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-0597::::</label>
                <annotation_details>Half map of PF846 stalled human ribosome nascent chain complex (PCSK9-RNC) in rotated state with AA tRNA and PE tRNA.</annotation_details>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
