2024-10-09 REL PDBe PDBe PDBe 2018-05-15 2018-07-18 2019-01-02 2024-10-09 Knut and Alice Wallenberg Foundation Sweden Saccharomyces cerevisiae respiratory supercomplex III2IV Rathore S Berndtsson J Respiratory chain, supercomplex, bc1 complex, cytochrome c oxidase, ELECTRON TRANSPORT Rathore S Berndtsson J Marin-Buera L Conrad J Carroni M Brzezinski P Ott M Cryo-EM structure of the yeast respiratory supercomplex. Nat. Struct. Mol. Biol. US 26 50 57 2019 30598556 doi:10.1038/s41594-018-0169-7 1545-9985 6giq FULLOVERLAP Saccharomyces cerevisiae Supercomplex (III2IV) Saccharomyces cerevisiae Supercomplex (III2IV) 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 Saccharomyces cerevisiae W303 Mitochondria Saccharomyces cerevisiae complex III 1 1 2 3 4 5 6 7 8 9 10 Saccharomyces cerevisiae W303 Mitochondria Saccharomyces cerevisiae complex IV 1 11 12 13 14 15 16 17 18 19 20 21 22 Saccharomyces cerevisiae W303 Mitochondria BJ4_G0001550.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.05028259399999999 2 LEVO MLRTVTSKTVSNQFKRSLATAVATPKAEVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSK ENSAVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEENDHPNRV LEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKK KAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSL SYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSK LSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMSMMRW A0A6A5Q3X1 Cytochrome b-c1 complex subunit 2, mitochondrial Saccharomyces cerevisiae 0.040528008 2 LEVO MLSAARLQFAQGSVRRLTVSARDAPTKISTLAVKVHGGSRYATKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKS TLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL YDGVERVSLQDIKDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRFIGDSVAA IGIPVNKASLAQYEVLANYLTSALSELSGLISSAKLDKFTDGGLFTLFVRDQDSAVVSSNIKKIVADLKKGKDLSPAINY TKLKNAVQNESVSSPIELNFDAVKDFKLGKFNYVAVGDVSNLPYLDEL A0A6A5Q625 Cytochrome b Saccharomyces cerevisiae 0.04368659 2 LEVO MAFRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRY LHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGND IVSWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLIL ALFVFYSPNTLGHPDNYIPGNPLVTPASIVPEWYLLPFYAILRSIPDKLLGVITMFAAILVLLVLPFTDRSVVRGNTFKV LSKFFFFIFVFNFVLLGQIGACHVEVPYVLMGQIATFIYFAYFLIIVPVISTIENVLFYIGRVNK A0A0G3F5W7 BJ4_G0049990.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.034097523 2 LEVO MFSNLSKRWAQRTLSKSFYSTATGAASKSGKLTQKLVTAGVAAAGITASTLLYADSLTAEAMTAAEHGLHAPAYAWSHNG PFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYP NEQAARAANQGALPPDLSLIVKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGT PATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPKPRK A0A5B9RH60 Cytochrome b-c1 complex subunit Rieske, mitochondrial Saccharomyces cerevisiae 0.023393973000000002 2 LEVO MLGIRSSVKTCFKPMSLTSKRLISQSLLASKSTYRTPNFDDVLKENNDADKGRSYAYFMVGAMGLLSSAGAKSTVETFIS SMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICT HLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEFDGDKVIVG A0A6A5PX11 7.1.1.8 QCR6 isoform 1 Saccharomyces cerevisiae 0.017276074 2 LEVO MGMLELVGEYWEQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLED LREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK A0A6A5Q022 Complex III subunit 7 Saccharomyces cerevisiae 0.014583754999999999 2 LEVO MPQSFTSIARIGDYILKSPVLSKLCVPVANQFINLAGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQ TELTHHLLPRNEWIKAQEDVPYLLPYILEAEAAAKEKDELDNIEVSK A0A6A5Q2H4 BJ4_G0028260.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.010987511 2 LEVO MGPPSGKTYMGWWGHMGGPKQKGITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL YSKAGREELERVNV A0A6A5PU80 HLJ1_G0021680.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.007485334 2 LEVO MSFSSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKGKLWKDVKARIAAGDGDDDDE A0A6L0Z0I8 BJ4_G0023510.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.008602913 2 LEVO MAYTSHLSSKTGLHFGRLSLRSLTAYAPNLMLWGGASMLGLFVFTEGWPKFQDTLYKKIPLLGPTLEDHTPPEDKPN A0A6L0ZE60 Cytochrome c oxidase subunit 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.058832586 1 LEVO MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFG NYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLL GAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFG HPEVYILIIPGFGIISHVVSTYSKKPVFGEISMVYAMASIGLLGFLVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKI FSWLATIHGGSIRLATPMLYAIAFLFLFTMGGLTGVALANASLDVAFHDTYYVVGHFHYVLSMGAIFSLFAGYYYWSPQI LGLNYNEKLAQIQFWLIFIGANVIFFPMHFLGINGMPRRIPDYPDAFAGWNYVASIGSFIATLSLFLFIYILYDQLVNGL NNKVNNKSVIYNKAPDFVESNTIFNLNTVKSSSIEFLLTSPPAVHSFNTPAVQS P00401 7.1.1.9 Cytochrome c oxidase subunit 2 Saccharomyces cerevisiae 0.028585054999999998 1 LEVO MLDLLRLQLTTFIMNDVPTPYACYFQDSATPNQEGILELHDNIMFYLLVILGLVSWMLYTIVMTYSKNPIAYKYIKHGQT IEVIWTIFPAVILLIIAFPSFILLYLCDEVISPAMTIKAIGYQWYWKYEYSDFINDSGETVEFESYVIPDELLEEGQLRL LDTDTSMVVPVDTHIRFVVTAADVIHDFAIPSLGIKVDATPGRLNQVSALIQREGVFYGACSELCGTGHANMPIKIEAVS LPKFLEWLNEQ A0A0H3WI21 Cytochrome c oxidase subunit 3 Saccharomyces cerevisiae 0.030383581999999996 1 LEVO MTHLERSRHQQHPFHMVMPSPWPIVVSFALLSLALSTALTMHGYIGNMNMVYLALFVLLTSSILWFRDIVAEATYLGDHT MAVRKGINLGFLMFVLSEVLIFAGLFWAYFHSAMSPDVTLGACWPPVGIEAVQPTELPLLNTIILLSSGATVTYSHHALI AGNRNKALSGLLITFWLIVIFVTCQYIEYTNAAFTISDGVYGSVFYAGTGLHFLHMVMLAAMLGVNYWRMRNYHLTAGHH VGYETTIIYTHVLDVIWLFLYVVFYWWGV A0A0G3F1J2 BJ4_G0018620.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.017164557 1 LEVO MLSLRQSIRFFKPATRTLCSSRYLLQQKPVVKTAQNLAEVNGPETLIGPGAKEGTVPTDLDQETGLARLELLGKLEGIDV FDTKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPAGSHTIMWLKPTVNEVARCWECGSVYKLNPVGVPNDDHHH A0A6A5PV33 BJ4_G0046460.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.017161465 1 LEVO MLRNTFTRAGGLSRITSVRFAQTHALSNAAVMDLQSRWENMPSTEQQDIVSKLSERQKLPWAQLTEPEKQAVWYISYGEW GPRRPVLNKGDSSFIAKGVAAGLLFSVGLFAVVRMAGGQDAKTMNKEWQLKSDEYLKSKNANPWGGYSQVQSK A0A6A5Q8F6 BJ4_G0024040.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.0173666 1 LEVO MLSRAIFRNPVINRTLLRARPGAYHATRLTKNTFIQSRKYSDAHDEETFEEFTARYEKEFDEAYDLFEVQRVLNNCFSYD LVPAPAVIEKALRAARRVNDLPTAIRVFEALKYKVENEDQYKAYLDELKDVRQELGVPLKEELFPSSS A0A6A5PUE0 BJ4_G0043230.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.006942349 1 LEVO MANKVIQLQKIFQSSTKPLWWRHPRSALYLYPFYAIFAVAVVTPLLYIPNAIRGIKAKKA A0A6A5PQU1 BJ4_G0038800.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.008921686 1 LEVO MLCQQMIRTTAKRSSNIMTRPIIMKRSVHFKDGVYENIPFKVKGRKTPYALSHFGFFAIGFAVPFVACYVQLKKSGAF A0A6A5PRD8 Cytochrome c oxidase polypeptide VIIA Saccharomyces cerevisiae 0.006974225999999999 1 LEVO MTIAPITGTIKRRVIMDIVLGFSLGGVMASYWWWGFHMDKINKREKFYAELAERKKQEN A0A6A5Q104 BJ4_G0035470.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.009799895 1 LEVO MADQENSPLHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWDDQREKGIFAGDI NSD A0A6A5PU81 Cytochrome c oxidase subunit Saccharomyces cerevisiae 0.015046146 1 LEVO MFRQCAKRYASSLPPNALKPAFGPPDKVAAQKFKESLMATEKHAKDTSNMWVKISVWVALPAIALTAVNTYFVEKEHAEH REHLKHVPDSEWPRDYEFMNIRSKPFFWGDGDKTLFWNPVVNRHIEHDD A0A6A5PWA0 Unknown Cox subunit Saccharomyces cerevisiae 0.0026562649999999997 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate 0.000592785 2 6PH HEME C 0.0006185030000000001 6 HEC (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate 0.0006919589999999999 2 8PE (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate 0.000634631 1 CN5 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL 0.0005928909999999999 2 UQ6 (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate 0.000564732 2 7PH FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 2 FES 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE 0.0007340389999999999 2 PCF (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate 0.000593773 2 9PE (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate 0.0008348619999999999 1 CN3 COPPER (II) ION 6.354599999999999e-05 1 CU HEME-A 0.000852837 2 HEA DINUCLEAR COPPER ION 0.00012709199999999998 1 CUA singleParticle particle 7.4 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) COUNTING 1.0 1
ABINITIO MODEL
 C1 3.23 FSC 0.143 CUT-OFF cryoSPARC 203271 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_0004.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 370 370 370 0 0 0 370 370 370 392.19998 392.19998 392.19998 90.0 90.0 90.0 X Y Z -1.2225217 2.422639 0.008202017 0.08052676 1.06 1.06 1.06 0.33 AUTHOR Modelling map OTHER Cross-Correlation coefficient REAL emd_0004_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 370 370 370 0 0 0 370 370 370 392.19998 392.19998 392.19998 90.0 90.0 90.0 X Y Z -0.4680446 1.6199132 0.006163153 0.07156241 1.06 1.06 1.06 AUTHOR Halfmap1 emd_0004_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 370 370 370 0 0 0 370 370 370 392.19998 392.19998 392.19998 90.0 90.0 90.0 X Y Z -0.4322865 1.5378633 0.006182815 0.07155251 1.06 1.06 1.06 AUTHOR Halfmap2