Schema emd_v1_4_public.xsd

schema location:	emd_v1_4.xsd
targetNamespace:	EMDSchema

Elements	Complex types	Simple types
emdEntry	accVoltType	aggrType
	adminType	cmpntClassType
	anglType	entClassType
	axisOrderType	eSourceType
	bufferType	goIdType
	cAngleType	ictvIdType
	cellCompType	illumType
	cellType	imgFormatType
	crystSizeType	imgModeType
	csType	iprIdType
	cType	mapDataType
	defocusType	naClassType
	depType	naStructType
	diamType	plGrpType
	dimensionType	virusClassType
	eDoseType	virusIsolType
	emDsType
	engSrcType
	entryType
	eWindowType
	expType
	figSetType
	figType
	fittingType
	fscSetType
	fscType
	helixType
	icosType
	imgScanType
	imgType
	jrnlArtType
	labelType
	layerLineType
	lengthType
	ligandType
	limitType
	limType
	mapFileType
	mapType
	mskFileType
	mskSetType
	mskType
	mwType
	natSrcType
	nuclAcidType
	originType
	origType
	pixelSpacingType
	pixType
	processType
	proteinType
	prRefType
	pubType
	reconsType
	riboTypeChi
	riboTypeEu
	riboTypePro
	samplConcType
	samplSizeType
	samplType
	singPartType
	slcFileType
	slcSetType
	slcType
	smplCompListType
	smplCompType
	smplPrepType
	spacingType
	statisticsType
	structFactType
	supplType
	tempType
	tiltType
	tomogrType
	virusType
	vitrifType
	xtal2DType

element emdEntry

diagram

admin deposition map sample experiment processing supplement

attributes

Name	Type	Use	Default	Fixed	Annotation
accessCode	xs:string	required

source

<xs:element name="emdEntry" type="emd:entryType"/>

complexType accVoltType

extension of xs:decimal

used by

element

imgType/acceleratingVoltage

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		kV

source

<xs:complexType name="accVoltType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="kV"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType adminType

         Information relevant for
        Administration purposes. Not for public release

source

<xs:complexType name="adminType">
  <xs:annotation>
    <xs:documentation xml:lang="en">         Information relevant for
        Administration purposes. Not for public release       </xs:documentation>
  </xs:annotation>
  <xs:all>
    <xs:element name="lastUpdate" type="xs:date"/>
  </xs:all>
</xs:complexType>

element adminType/lastUpdate

diagram
namespace	EMDSchema
type	xs:date
source	<xs:element name="lastUpdate" type="xs:date"/>

extension of xs:decimal

used by

elements

xtal2DType/alpha xtal2DType/beta helixType/deltaPhi xtal2DType/gamma

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:complexType name="anglType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="degrees"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType axisOrderType

axisOrderFast axisOrderMedium axisOrderSlow

used by

elements

mapType/axisOrder mskType/axisOrder slcType/axisOrder

source

<xs:complexType name="axisOrderType">
  <xs:all>
    <xs:element name="axisOrderFast" type="xs:string"/>
    <xs:element name="axisOrderMedium" type="xs:string"/>
    <xs:element name="axisOrderSlow" type="xs:string"/>
  </xs:all>
</xs:complexType>

element axisOrderType/axisOrderFast

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="axisOrderFast" type="xs:string"/>

element axisOrderType/axisOrderMedium

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="axisOrderMedium" type="xs:string"/>

element axisOrderType/axisOrderSlow

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="axisOrderSlow" type="xs:string"/>

complexType bufferType

ph sampleConc details

<xs:complexType name="bufferType">
  <xs:all>
    <xs:element name="ph" type="xs:decimal" minOccurs="0"/>
    <xs:element name="sampleConc" type="emd:samplConcType" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element bufferType/ph

diagram
namespace	EMDSchema
type	xs:decimal
source	<xs:element name="ph" type="xs:decimal" minOccurs="0"/>

element bufferType/sampleConc

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		mg/ml

source

<xs:element name="sampleConc" type="emd:samplConcType" minOccurs="0"/>

element bufferType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType cAngleType

extension of xs:decimal

used by

elements

cellType/cellAlpha cellType/cellBeta cellType/cellGamma

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:complexType name="cAngleType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="degrees"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType cellCompType

sciSpeciesName synSpeciesName oligomericDetails numCopies mutantFlag refInterpro refGo natSource engSource strain details

used by

element

smplCompType/cellular-component

source

<xs:complexType name="cellCompType">
  <xs:all>
    <xs:element name="sciSpeciesName" type="xs:string" minOccurs="0"/>
    <xs:element name="synSpeciesName" type="xs:string" minOccurs="0"/>
    <xs:element name="oligomericDetails" type="xs:string" minOccurs="0"/>
    <xs:element name="numCopies" type="xs:string" minOccurs="0"/>
    <xs:element name="mutantFlag" type="xs:boolean"/>
    <xs:element name="refInterpro" type="emd:iprIdType" minOccurs="0"/>
    <xs:element name="refGo" type="emd:goIdType" minOccurs="0"/>
    <xs:element name="natSource" type="emd:natSrcType" minOccurs="0"/>
    <xs:element name="engSource" type="emd:engSrcType" minOccurs="0"/>
    <xs:element name="strain" type="xs:string" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element cellCompType/sciSpeciesName

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="sciSpeciesName" type="xs:string" minOccurs="0"/>

element cellCompType/synSpeciesName

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="synSpeciesName" type="xs:string" minOccurs="0"/>

element cellCompType/oligomericDetails

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="oligomericDetails" type="xs:string" minOccurs="0"/>

element cellCompType/numCopies

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="numCopies" type="xs:string" minOccurs="0"/>

element cellCompType/mutantFlag

diagram
namespace	EMDSchema
type	xs:boolean
source	<xs:element name="mutantFlag" type="xs:boolean"/>

element cellCompType/refInterpro

<xs:element name="refInterpro" type="emd:iprIdType" minOccurs="0"/>

element cellCompType/refGo

<xs:element name="refGo" type="emd:goIdType" minOccurs="0"/>

element cellCompType/natSource

diagram
namespace	EMDSchema
type	natSrcType
children	cell organ tissue cellLocation
source	<xs:element name="natSource" type="emd:natSrcType" minOccurs="0"/>

element cellCompType/engSource

diagram
namespace	EMDSchema
type	engSrcType
children	expSystem vector
source	<xs:element name="engSource" type="emd:engSrcType" minOccurs="0"/>

element cellCompType/strain

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="strain" type="xs:string" minOccurs="0"/>

element cellCompType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

cellA cellB cellC cellAlpha cellBeta cellGamma

used by

elements

mapType/cell mskType/cell slcType/cell

source

<xs:complexType name="cellType">
  <xs:all>
    <xs:element name="cellA" type="emd:cType" minOccurs="0"/>
    <xs:element name="cellB" type="emd:cType" minOccurs="0"/>
    <xs:element name="cellC" type="emd:cType" minOccurs="0"/>
    <xs:element name="cellAlpha" type="emd:cAngleType" minOccurs="0"/>
    <xs:element name="cellBeta" type="emd:cAngleType" minOccurs="0"/>
    <xs:element name="cellGamma" type="emd:cAngleType" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element cellType/cellA

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="cellA" type="emd:cType" minOccurs="0"/>

element cellType/cellB

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="cellB" type="emd:cType" minOccurs="0"/>

element cellType/cellC

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="cellC" type="emd:cType" minOccurs="0"/>

element cellType/cellAlpha

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:element name="cellAlpha" type="emd:cAngleType" minOccurs="0"/>

element cellType/cellBeta

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:element name="cellBeta" type="emd:cAngleType" minOccurs="0"/>

element cellType/cellGamma

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:element name="cellGamma" type="emd:cAngleType" minOccurs="0"/>

complexType crystSizeType

extension of xs:decimal

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		microns**2

source

<xs:complexType name="crystSizeType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="microns**2"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

extension of xs:decimal

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		mm

source

<xs:complexType name="csType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="mm"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

extension of xs:decimal

used by

elements

cellType/cellA cellType/cellB cellType/cellC

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:complexType name="cType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="A"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType defocusType

extension of xs:string

used by

elements

imgType/nominalDefocusMax imgType/nominalDefocusMin

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		nM

source

<xs:complexType name="defocusType">
  <xs:simpleContent>
    <xs:extension base="xs:string">
      <xs:attribute name="units" type="xs:string" use="required" fixed="nM"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

mapReleaseDate sfReleaseDate llReleaseDate replaceExistingEntry primaryReference

         Contains context
        information relevant to the EMD entry record

source

<xs:complexType name="depType">
  <xs:annotation>
    <xs:documentation xml:lang="en">         Contains context
        information relevant to the EMD entry record       </xs:documentation>
  </xs:annotation>
  <xs:all>
    <xs:element name="mapReleaseDate" type="xs:date"/>
    <xs:element name="sfReleaseDate" type="xs:date" minOccurs="0"/>
    <xs:element name="llReleaseDate" type="xs:date" minOccurs="0"/>
    <xs:element name="replaceExistingEntry" type="xs:boolean"/>
    <xs:element name="primaryReference" type="emd:prRefType"/>
  </xs:all>
</xs:complexType>

element depType/mapReleaseDate

diagram
namespace	EMDSchema
type	xs:date
source	<xs:element name="mapReleaseDate" type="xs:date"/>

element depType/sfReleaseDate

diagram
namespace	EMDSchema
type	xs:date
source	<xs:element name="sfReleaseDate" type="xs:date" minOccurs="0"/>

element depType/llReleaseDate

diagram
namespace	EMDSchema
type	xs:date
source	<xs:element name="llReleaseDate" type="xs:date" minOccurs="0"/>

element depType/replaceExistingEntry

diagram
namespace	EMDSchema
type	xs:boolean
source	<xs:element name="replaceExistingEntry" type="xs:boolean"/>

element depType/primaryReference

Name	Type	Use	Default	Fixed	Annotation
published	xs:boolean	required

source

<xs:element name="primaryReference" type="emd:prRefType"/>

extension of xs:decimal

used by

elements

virusType/diameterOne virusType/diameterThree virusType/diameterTwo

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:complexType name="diamType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="A"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType dimensionType

numRows numColumns numSections

used by

elements

mapType/dimensions mskType/dimensions slcType/dimensions

source

<xs:complexType name="dimensionType">
  <xs:all>
    <xs:element name="numRows" type="xs:positiveInteger"/>
    <xs:element name="numColumns" type="xs:positiveInteger"/>
    <xs:element name="numSections" type="xs:positiveInteger"/>
  </xs:all>
</xs:complexType>

element dimensionType/numRows

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="numRows" type="xs:positiveInteger"/>

element dimensionType/numColumns

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="numColumns" type="xs:positiveInteger"/>

element dimensionType/numSections

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="numSections" type="xs:positiveInteger"/>

complexType eDoseType

extension of xs:decimal

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		e/A**2

source

<xs:complexType name="eDoseType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="e/A**2"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

twoDCrystal icosahedral helical singleParticle individualStructure

used by

element

processType/emDataSet

source

<xs:complexType name="emDsType">
  <xs:choice>
    <xs:element name="twoDCrystal" type="emd:xtal2DType" maxOccurs="unbounded"/>
    <xs:element name="icosahedral" type="emd:icosType" maxOccurs="unbounded"/>
    <xs:element name="helical" type="emd:helixType" maxOccurs="unbounded"/>
    <xs:element name="singleParticle" type="emd:singPartType" maxOccurs="unbounded"/>
    <xs:element name="individualStructure" type="emd:tomogrType" maxOccurs="unbounded"/>
  </xs:choice>
</xs:complexType>

element emDsType/twoDCrystal

diagram
namespace	EMDSchema
type	xtal2DType
children	aLength bLength cLength alpha beta gamma planeGroup details crystalGrowDetails structureFactor
source	<xs:element name="twoDCrystal" type="emd:xtal2DType" maxOccurs="unbounded"/>

element emDsType/icosahedral

diagram
namespace	EMDSchema
type	icosType
children	numProjections numClassAverages details
source	<xs:element name="icosahedral" type="emd:icosType" maxOccurs="unbounded"/>

element emDsType/helical

diagram
namespace	EMDSchema
type	helixType
children	deltaPhi deltaZ hand axialSymmetry details crystalGrowDetails layerLines
source	<xs:element name="helical" type="emd:helixType" maxOccurs="unbounded"/>

element emDsType/singleParticle

diagram
namespace	EMDSchema
type	singPartType
children	numProjections numClassAverages details
source	<xs:element name="singleParticle" type="emd:singPartType" maxOccurs="unbounded"/>

element emDsType/individualStructure

diagram
namespace	EMDSchema
type	tomogrType
children	tiltAngleIncrement numSections details
source	<xs:element name="individualStructure" type="emd:tomogrType" maxOccurs="unbounded"/>

complexType engSrcType

proteinType/engSource cellCompType/engSource ligandType/engSource

source

<xs:complexType name="engSrcType">
  <xs:all>
    <xs:element name="expSystem" type="xs:string" minOccurs="0"/>
    <xs:element name="vector" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element engSrcType/expSystem

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="expSystem" type="xs:string" minOccurs="0"/>

element engSrcType/vector

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="vector" type="xs:string" minOccurs="0"/>

complexType entryType

admin deposition map sample experiment processing supplement

Name	Type	Use	Default	Fixed	Annotation
accessCode	xs:string	required

annotation

documentation

         Electron Microscopy
        Database record identified by its accession code (or unique
        identifier)

source

<xs:complexType name="entryType">
  <xs:annotation>
    <xs:documentation xml:lang="en">         Electron Microscopy
        Database record identified by its accession code (or unique
        identifier)       </xs:documentation>
  </xs:annotation>
  <xs:all>
    <xs:element name="admin" type="emd:adminType"/>
    <xs:element name="deposition" type="emd:depType"/>
    <xs:element name="map" type="emd:mapType"/>
    <xs:element name="sample" type="emd:samplType"/>
    <xs:element name="experiment" type="emd:expType"/>
    <xs:element name="processing" type="emd:processType"/>
    <xs:element name="supplement" type="emd:supplType" minOccurs="0"/>
  </xs:all>
  <xs:attribute name="accessCode" type="xs:string" use="required"/>
</xs:complexType>

element entryType/admin

diagram
namespace	EMDSchema
type	adminType
children	lastUpdate
source	<xs:element name="admin" type="emd:adminType"/>

element entryType/deposition

diagram
namespace	EMDSchema
type	depType
children	mapReleaseDate sfReleaseDate llReleaseDate replaceExistingEntry primaryReference
source	<xs:element name="deposition" type="emd:depType"/>

element entryType/map

diagram
namespace	EMDSchema
type	mapType
children	file dataType dimensions spacing origin limit cell axisOrder statistics pixelSpacing details spaceGroupNumber annotationDetails
source	<xs:element name="map" type="emd:mapType"/>

element entryType/sample

diagram
namespace	EMDSchema
type	samplType
children	name aggregationState compDegree molWtTheo molWtExp molWtMethod details numComponents sampleComponentList
source	<xs:element name="sample" type="emd:samplType"/>

element entryType/experiment

diagram
namespace	EMDSchema
type	expType
children	vitrification imaging imageScans fitting samplePreparation
source	<xs:element name="experiment" type="emd:expType"/>

element entryType/processing

diagram
namespace	EMDSchema
type	processType
children	reconstruction emDataSet
source	<xs:element name="processing" type="emd:processType"/>

element entryType/supplement

diagram
namespace	EMDSchema
type	supplType
children	figureSet fscSet maskSet sliceSet
source	<xs:element name="supplement" type="emd:supplType" minOccurs="0"/>

complexType eWindowType

extension of xs:string

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		eV

source

<xs:complexType name="eWindowType">
  <xs:simpleContent>
    <xs:extension base="xs:string">
      <xs:attribute name="units" type="xs:string" use="required" fixed="eV"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

vitrification imaging imageScans fitting samplePreparation

         Contains information
        relevant to the experimental techniques to obtain data

source

<xs:complexType name="expType">
  <xs:annotation>
    <xs:documentation xml:lang="en">         Contains information
        relevant to the experimental techniques to obtain data       </xs:documentation>
  </xs:annotation>
  <xs:sequence>
    <xs:element name="vitrification" type="emd:vitrifType" maxOccurs="unbounded"/>
    <xs:element name="imaging" type="emd:imgType" maxOccurs="unbounded"/>
    <xs:element name="imageScans" type="emd:imgScanType" maxOccurs="unbounded"/>
    <xs:element name="fitting" type="emd:fittingType" maxOccurs="unbounded"/>
    <xs:element name="samplePreparation" type="emd:smplPrepType" maxOccurs="unbounded"/>
  </xs:sequence>
</xs:complexType>

element expType/vitrification

diagram
namespace	EMDSchema
type	vitrifType
children	cryogenName humidity temperature instrument method timeResolvedState details
source	<xs:element name="vitrification" type="emd:vitrifType" maxOccurs="unbounded"/>

element expType/imaging

diagram
namespace	EMDSchema
type	imgType
children	microscope specimenHolder specimenHolderModel acceleratingVoltage illuminationMode imagingMode nominalCs nominalDefocusMin nominalDefocusMax tiltAngleMin tiltAngleMax nominalMagnification calibratedMagnification electronSource electronDose energyFilter energyWindow temperature temperatureMin temperatureMax detector detectorDistance date electronBeamTiltParams astigmatism details
source	<xs:element name="imaging" type="emd:imgType" maxOccurs="unbounded"/>

element expType/imageScans

diagram
namespace	EMDSchema
type	imgScanType
children	numDigitalImages scanner samplingSize odRange quantBitNumber details
source	<xs:element name="imageScans" type="emd:imgScanType" maxOccurs="unbounded"/>

element expType/fitting

diagram
namespace	EMDSchema
type	fittingType
children	refProtocol targetCriteria software overallBValue refSpace pdbEntryId pdbChainId details
source	<xs:element name="fitting" type="emd:fittingType" maxOccurs="unbounded"/>

element expType/samplePreparation

diagram
namespace	EMDSchema
type	smplPrepType
children	buffer staining sampleSupportDetails
source	<xs:element name="samplePreparation" type="emd:smplPrepType" maxOccurs="unbounded"/>

complexType figSetType

<xs:complexType name="figSetType">
  <xs:sequence>
    <xs:element name="figure" type="emd:figType" minOccurs="0" maxOccurs="unbounded"/>
  </xs:sequence>
</xs:complexType>

element figSetType/figure

diagram
namespace	EMDSchema
type	figType
children	file details
source	<xs:element name="figure" type="emd:figType" minOccurs="0" maxOccurs="unbounded"/>

<xs:complexType name="figType">
  <xs:all>
    <xs:element name="file" type="xs:string"/>
    <xs:element name="details" type="xs:string"/>
  </xs:all>
</xs:complexType>

element figType/file

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="file" type="xs:string"/>

element figType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string"/>

complexType fittingType

refProtocol targetCriteria software overallBValue refSpace pdbEntryId pdbChainId details

         Contains information on
        the procedure to fit atomic coordinate data to an EM map

source

<xs:complexType name="fittingType">
  <xs:annotation>
    <xs:documentation xml:lang="en">         Contains information on
        the procedure to fit atomic coordinate data to an EM map       </xs:documentation>
  </xs:annotation>
  <xs:all>
    <xs:element name="refProtocol" type="xs:string" minOccurs="0"/>
    <xs:element name="targetCriteria" type="xs:string" minOccurs="0"/>
    <xs:element name="software" type="xs:string" minOccurs="0"/>
    <xs:element name="overallBValue" type="xs:decimal" minOccurs="0"/>
    <xs:element name="refSpace" type="xs:string" minOccurs="0"/>
    <xs:element name="pdbEntryId" type="xs:string" minOccurs="0"/>
    <xs:element name="pdbChainId" type="xs:string" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element fittingType/refProtocol

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="refProtocol" type="xs:string" minOccurs="0"/>

element fittingType/targetCriteria

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="targetCriteria" type="xs:string" minOccurs="0"/>

element fittingType/software

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="software" type="xs:string" minOccurs="0"/>

element fittingType/overallBValue

diagram
namespace	EMDSchema
type	xs:decimal
source	<xs:element name="overallBValue" type="xs:decimal" minOccurs="0"/>

element fittingType/refSpace

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="refSpace" type="xs:string" minOccurs="0"/>

element fittingType/pdbEntryId

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="pdbEntryId" type="xs:string" minOccurs="0"/>

element fittingType/pdbChainId

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="pdbChainId" type="xs:string" minOccurs="0"/>

element fittingType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType fscSetType

<xs:complexType name="fscSetType">
  <xs:sequence>
    <xs:element name="fsc" type="emd:fscType" minOccurs="0" maxOccurs="unbounded"/>
  </xs:sequence>
</xs:complexType>

element fscSetType/fsc

diagram
namespace	EMDSchema
type	fscType
children	file details
source	<xs:element name="fsc" type="emd:fscType" minOccurs="0" maxOccurs="unbounded"/>

<xs:complexType name="fscType">
  <xs:all>
    <xs:element name="file" type="xs:string"/>
    <xs:element name="details" type="xs:string"/>
  </xs:all>
</xs:complexType>

element fscType/file

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="file" type="xs:string"/>

element fscType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string"/>

complexType helixType

deltaPhi deltaZ hand axialSymmetry details crystalGrowDetails layerLines

<xs:complexType name="helixType">
  <xs:all>
    <xs:element name="deltaPhi" type="emd:anglType" minOccurs="0"/>
    <xs:element name="deltaZ" type="emd:lengthType" minOccurs="0"/>
    <xs:element name="hand" type="xs:string" minOccurs="0"/>
    <xs:element name="axialSymmetry" type="xs:string" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
    <xs:element name="crystalGrowDetails" type="xs:string" minOccurs="0"/>
    <xs:element name="layerLines" type="emd:layerLineType" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element helixType/deltaPhi

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:element name="deltaPhi" type="emd:anglType" minOccurs="0"/>

element helixType/deltaZ

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="deltaZ" type="emd:lengthType" minOccurs="0"/>

element helixType/hand

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="hand" type="xs:string" minOccurs="0"/>

element helixType/axialSymmetry

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="axialSymmetry" type="xs:string" minOccurs="0"/>

element helixType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

element helixType/crystalGrowDetails

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="crystalGrowDetails" type="xs:string" minOccurs="0"/>

element helixType/layerLines

diagram
namespace	EMDSchema
type	layerLineType
children	file details
source	<xs:element name="layerLines" type="emd:layerLineType" minOccurs="0"/>

numProjections numClassAverages details

<xs:complexType name="icosType">
  <xs:all>
    <xs:element name="numProjections" type="xs:positiveInteger" minOccurs="0"/>
    <xs:element name="numClassAverages" type="xs:string" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element icosType/numProjections

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="numProjections" type="xs:positiveInteger" minOccurs="0"/>

element icosType/numClassAverages

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="numClassAverages" type="xs:string" minOccurs="0"/>

element icosType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType imgScanType

numDigitalImages scanner samplingSize odRange quantBitNumber details

<xs:complexType name="imgScanType">
  <xs:all>
    <xs:element name="numDigitalImages" type="xs:positiveInteger" minOccurs="0"/>
    <xs:element name="scanner" type="xs:string" minOccurs="0"/>
    <xs:element name="samplingSize" type="emd:samplSizeType" minOccurs="0"/>
    <xs:element name="odRange" type="xs:decimal" minOccurs="0"/>
    <xs:element name="quantBitNumber" type="xs:positiveInteger" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element imgScanType/numDigitalImages

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="numDigitalImages" type="xs:positiveInteger" minOccurs="0"/>

element imgScanType/scanner

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="scanner" type="xs:string" minOccurs="0"/>

element imgScanType/samplingSize

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		microns

source

<xs:element name="samplingSize" type="emd:samplSizeType" minOccurs="0"/>

element imgScanType/odRange

diagram
namespace	EMDSchema
type	xs:decimal
source	<xs:element name="odRange" type="xs:decimal" minOccurs="0"/>

element imgScanType/quantBitNumber

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="quantBitNumber" type="xs:positiveInteger" minOccurs="0"/>

element imgScanType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

microscope specimenHolder specimenHolderModel acceleratingVoltage illuminationMode imagingMode nominalCs nominalDefocusMin nominalDefocusMax tiltAngleMin tiltAngleMax nominalMagnification calibratedMagnification electronSource electronDose energyFilter energyWindow temperature temperatureMin temperatureMax detector detectorDistance date electronBeamTiltParams astigmatism details

<xs:complexType name="imgType">
  <xs:all>
    <xs:element name="microscope" type="xs:string"/>
    <xs:element name="specimenHolder" type="xs:string"/>
    <xs:element name="specimenHolderModel" type="xs:string"/>
    <xs:element name="acceleratingVoltage" type="emd:accVoltType" minOccurs="0"/>
    <xs:element name="illuminationMode" type="emd:illumType"/>
    <xs:element name="imagingMode" type="emd:imgModeType"/>
    <xs:element name="nominalCs" type="emd:csType" minOccurs="0"/>
    <xs:element name="nominalDefocusMin" type="emd:defocusType" minOccurs="0"/>
    <xs:element name="nominalDefocusMax" type="emd:defocusType" minOccurs="0"/>
    <xs:element name="tiltAngleMin" type="emd:tiltType" minOccurs="0"/>
    <xs:element name="tiltAngleMax" type="emd:tiltType" minOccurs="0"/>
    <xs:element name="nominalMagnification" type="xs:decimal" minOccurs="0"/>
    <xs:element name="calibratedMagnification" type="xs:decimal" minOccurs="0"/>
    <xs:element name="electronSource" type="emd:eSourceType"/>
    <xs:element name="electronDose" type="emd:eDoseType" minOccurs="0"/>
    <xs:element name="energyFilter" type="xs:string" minOccurs="0"/>
    <xs:element name="energyWindow" type="emd:eWindowType" minOccurs="0"/>
    <xs:element name="temperature" type="emd:tempType" minOccurs="0"/>
    <xs:element name="temperatureMin" type="emd:tempType" minOccurs="0"/>
    <xs:element name="temperatureMax" type="emd:tempType" minOccurs="0"/>
    <xs:element name="detector" type="xs:string" minOccurs="0"/>
    <xs:element name="detectorDistance" type="xs:string" minOccurs="0"/>
    <xs:element name="date" type="xs:string" minOccurs="0"/>
    <xs:element name="electronBeamTiltParams" type="xs:string" minOccurs="0"/>
    <xs:element name="astigmatism" type="xs:string" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element imgType/microscope

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="microscope" type="xs:string"/>

element imgType/specimenHolder

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="specimenHolder" type="xs:string"/>

element imgType/specimenHolderModel

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="specimenHolderModel" type="xs:string"/>

element imgType/acceleratingVoltage

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		kV

source

<xs:element name="acceleratingVoltage" type="emd:accVoltType" minOccurs="0"/>

element imgType/illuminationMode

enumeration	OTHER
enumeration	FLOOD BEAM
enumeration	SPOT SCAN

source

<xs:element name="illuminationMode" type="emd:illumType"/>

element imgType/imagingMode

enumeration	BRIGHT FIELD
enumeration	OTHER
enumeration	DARK FIELD
enumeration	DIFFRACTION

source

<xs:element name="imagingMode" type="emd:imgModeType"/>

element imgType/nominalCs

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		mm

source

<xs:element name="nominalCs" type="emd:csType" minOccurs="0"/>

element imgType/nominalDefocusMin

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		nM

source

<xs:element name="nominalDefocusMin" type="emd:defocusType" minOccurs="0"/>

element imgType/nominalDefocusMax

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		nM

source

<xs:element name="nominalDefocusMax" type="emd:defocusType" minOccurs="0"/>

element imgType/tiltAngleMin

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:element name="tiltAngleMin" type="emd:tiltType" minOccurs="0"/>

element imgType/tiltAngleMax

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:element name="tiltAngleMax" type="emd:tiltType" minOccurs="0"/>

element imgType/nominalMagnification

diagram
namespace	EMDSchema
type	xs:decimal
source	<xs:element name="nominalMagnification" type="xs:decimal" minOccurs="0"/>

element imgType/calibratedMagnification

diagram
namespace	EMDSchema
type	xs:decimal
source	<xs:element name="calibratedMagnification" type="xs:decimal" minOccurs="0"/>

element imgType/electronSource

enumeration	TUNGSTEN HAIRPIN
enumeration	LAB6
enumeration	FIELD EMISSION GUN
enumeration	OTHER

source

<xs:element name="electronSource" type="emd:eSourceType"/>

element imgType/electronDose

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		e/A**2

source

<xs:element name="electronDose" type="emd:eDoseType" minOccurs="0"/>

element imgType/energyFilter

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="energyFilter" type="xs:string" minOccurs="0"/>

element imgType/energyWindow

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		eV

source

<xs:element name="energyWindow" type="emd:eWindowType" minOccurs="0"/>

element imgType/temperature

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		Kelvin

source

<xs:element name="temperature" type="emd:tempType" minOccurs="0"/>

element imgType/temperatureMin

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		Kelvin

source

<xs:element name="temperatureMin" type="emd:tempType" minOccurs="0"/>

element imgType/temperatureMax

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		Kelvin

source

<xs:element name="temperatureMax" type="emd:tempType" minOccurs="0"/>

element imgType/detector

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="detector" type="xs:string" minOccurs="0"/>

element imgType/detectorDistance

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="detectorDistance" type="xs:string" minOccurs="0"/>

element imgType/date

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="date" type="xs:string" minOccurs="0"/>

element imgType/electronBeamTiltParams

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="electronBeamTiltParams" type="xs:string" minOccurs="0"/>

element imgType/astigmatism

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="astigmatism" type="xs:string" minOccurs="0"/>

element imgType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType jrnlArtType

year journal volume firstPage lastPage articleTitle authors

used by

element

pubType/journalArticle

source

<xs:complexType name="jrnlArtType">
  <xs:all>
    <xs:element name="year" type="xs:string" minOccurs="0"/>
    <xs:element name="journal" type="xs:string" minOccurs="0"/>
    <xs:element name="volume" type="xs:string" minOccurs="0"/>
    <xs:element name="firstPage" type="xs:string" minOccurs="0"/>
    <xs:element name="lastPage" type="xs:string" minOccurs="0"/>
    <xs:element name="articleTitle" type="xs:string"/>
    <xs:element name="authors" type="xs:string"/>
  </xs:all>
</xs:complexType>

element jrnlArtType/year

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="year" type="xs:string" minOccurs="0"/>

element jrnlArtType/journal

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="journal" type="xs:string" minOccurs="0"/>

element jrnlArtType/volume

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="volume" type="xs:string" minOccurs="0"/>

element jrnlArtType/firstPage

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="firstPage" type="xs:string" minOccurs="0"/>

element jrnlArtType/lastPage

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="lastPage" type="xs:string" minOccurs="0"/>

element jrnlArtType/articleTitle

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="articleTitle" type="xs:string"/>

element jrnlArtType/authors

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="authors" type="xs:string"/>

complexType labelType

formula oligomericDetails numCopies

<xs:complexType name="labelType">
  <xs:all>
    <xs:element name="formula" type="xs:string" minOccurs="0"/>
    <xs:element name="oligomericDetails" type="xs:string" minOccurs="0"/>
    <xs:element name="numCopies" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element labelType/formula

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="formula" type="xs:string" minOccurs="0"/>

element labelType/oligomericDetails

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="oligomericDetails" type="xs:string" minOccurs="0"/>

element labelType/numCopies

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="numCopies" type="xs:string" minOccurs="0"/>

complexType layerLineType

<xs:complexType name="layerLineType">
  <xs:all>
    <xs:element name="file" type="xs:string"/>
    <xs:element name="details" type="xs:string"/>
  </xs:all>
</xs:complexType>

element layerLineType/file

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="file" type="xs:string"/>

element layerLineType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string"/>

complexType lengthType

extension of xs:decimal

used by

elements

xtal2DType/aLength xtal2DType/bLength xtal2DType/cLength helixType/deltaZ spacingType/spacingCol spacingType/spacingRow spacingType/spacingSec

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:complexType name="lengthType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="A"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType ligandType

sciSpeciesName synSpeciesName oligomericDetails numCopies mutantFlag refInterpro refGo natSource engSource strain details

<xs:complexType name="ligandType">
  <xs:all>
    <xs:element name="sciSpeciesName" type="xs:string" minOccurs="0"/>
    <xs:element name="synSpeciesName" type="xs:string" minOccurs="0"/>
    <xs:element name="oligomericDetails" type="xs:string" minOccurs="0"/>
    <xs:element name="numCopies" type="xs:string" minOccurs="0"/>
    <xs:element name="mutantFlag" type="xs:boolean"/>
    <xs:element name="refInterpro" type="emd:iprIdType" minOccurs="0"/>
    <xs:element name="refGo" type="emd:goIdType" minOccurs="0"/>
    <xs:element name="natSource" type="emd:natSrcType" minOccurs="0"/>
    <xs:element name="engSource" type="emd:engSrcType" minOccurs="0"/>
    <xs:element name="strain" type="xs:string" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element ligandType/sciSpeciesName

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="sciSpeciesName" type="xs:string" minOccurs="0"/>

element ligandType/synSpeciesName

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="synSpeciesName" type="xs:string" minOccurs="0"/>

element ligandType/oligomericDetails

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="oligomericDetails" type="xs:string" minOccurs="0"/>

element ligandType/numCopies

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="numCopies" type="xs:string" minOccurs="0"/>

element ligandType/mutantFlag

diagram
namespace	EMDSchema
type	xs:boolean
source	<xs:element name="mutantFlag" type="xs:boolean"/>

element ligandType/refInterpro

<xs:element name="refInterpro" type="emd:iprIdType" minOccurs="0"/>

element ligandType/refGo

<xs:element name="refGo" type="emd:goIdType" minOccurs="0"/>

element ligandType/natSource

diagram
namespace	EMDSchema
type	natSrcType
children	cell organ tissue cellLocation
source	<xs:element name="natSource" type="emd:natSrcType" minOccurs="0"/>

element ligandType/engSource

diagram
namespace	EMDSchema
type	engSrcType
children	expSystem vector
source	<xs:element name="engSource" type="emd:engSrcType" minOccurs="0"/>

element ligandType/strain

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="strain" type="xs:string" minOccurs="0"/>

element ligandType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType limitType

limitRow limitCol limitSec

used by

elements

mapType/limit mskType/limit slcType/limit

source

<xs:complexType name="limitType">
  <xs:all>
    <xs:element name="limitRow" type="emd:limType"/>
    <xs:element name="limitCol" type="emd:limType"/>
    <xs:element name="limitSec" type="emd:limType"/>
  </xs:all>
</xs:complexType>

element limitType/limitRow

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="limitRow" type="emd:limType"/>

element limitType/limitCol

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="limitCol" type="emd:limType"/>

element limitType/limitSec

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="limitSec" type="emd:limType"/>

extension of xs:decimal

used by

elements

limitType/limitCol limitType/limitRow limitType/limitSec

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:complexType name="limType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="A"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType mapFileType

extension of xs:string

Name	Type	Use	Default	Fixed	Annotation
type	xs:string	required		map
format	xs:string	required		CCP4
sizeKb	xs:string	required

source

<xs:complexType name="mapFileType">
  <xs:simpleContent>
    <xs:extension base="xs:string">
      <xs:attribute name="type" type="xs:string" use="required" fixed="map"/>
      <xs:attribute name="format" type="xs:string" use="required" fixed="CCP4"/>
      <xs:attribute name="sizeKb" type="xs:string" use="required"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

file dataType dimensions spacing origin limit cell axisOrder statistics pixelSpacing details spaceGroupNumber annotationDetails

         Contains information on
        the 3D-EM volume (or map)

source

<xs:complexType name="mapType">
  <xs:annotation>
    <xs:documentation xml:lang="en">         Contains information on
        the 3D-EM volume (or map)       </xs:documentation>
  </xs:annotation>
  <xs:all>
    <xs:element name="file" type="emd:mapFileType"/>
    <xs:element name="dataType" type="emd:mapDataType"/>
    <xs:element name="dimensions" type="emd:dimensionType"/>
    <xs:element name="spacing" type="emd:spacingType"/>
    <xs:element name="origin" type="emd:originType"/>
    <xs:element name="limit" type="emd:limitType"/>
    <xs:element name="cell" type="emd:cellType"/>
    <xs:element name="axisOrder" type="emd:axisOrderType"/>
    <xs:element name="statistics" type="emd:statisticsType"/>
    <xs:element name="pixelSpacing" type="emd:pixelSpacingType"/>
    <xs:element name="details" type="xs:string"/>
    <xs:element name="spaceGroupNumber" type="xs:string"/>
    <xs:element name="annotationDetails" type="xs:string"/>
  </xs:all>
</xs:complexType>

Name	Type	Use	Default	Fixed	Annotation
type	xs:string	required		map
format	xs:string	required		CCP4
sizeKb	xs:string	required

source

<xs:element name="file" type="emd:mapFileType"/>

element mapType/dataType

enumeration	signed byte
enumeration	int
enumeration	float (32-bit)
enumeration	integer (16-bit)

source

<xs:element name="dataType" type="emd:mapDataType"/>

element mapType/dimensions

diagram
namespace	EMDSchema
type	dimensionType
children	numRows numColumns numSections
source	<xs:element name="dimensions" type="emd:dimensionType"/>

element mapType/spacing

diagram
namespace	EMDSchema
type	spacingType
children	spacingRow spacingCol spacingSec
source	<xs:element name="spacing" type="emd:spacingType"/>

element mapType/origin

diagram
namespace	EMDSchema
type	originType
children	originRow originCol originSec
source	<xs:element name="origin" type="emd:originType"/>

element mapType/limit

diagram
namespace	EMDSchema
type	limitType
children	limitRow limitCol limitSec
source	<xs:element name="limit" type="emd:limitType"/>

element mapType/cell

diagram
namespace	EMDSchema
type	cellType
children	cellA cellB cellC cellAlpha cellBeta cellGamma
source	<xs:element name="cell" type="emd:cellType"/>

element mapType/axisOrder

diagram
namespace	EMDSchema
type	axisOrderType
children	axisOrderFast axisOrderMedium axisOrderSlow
source	<xs:element name="axisOrder" type="emd:axisOrderType"/>

element mapType/statistics

diagram
namespace	EMDSchema
type	statisticsType
children	minimum maximum average std
source	<xs:element name="statistics" type="emd:statisticsType"/>

element mapType/pixelSpacing

diagram
namespace	EMDSchema
type	pixelSpacingType
children	pixelX pixelY pixelZ
source	<xs:element name="pixelSpacing" type="emd:pixelSpacingType"/>

element mapType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string"/>

element mapType/spaceGroupNumber

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="spaceGroupNumber" type="xs:string"/>

element mapType/annotationDetails

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="annotationDetails" type="xs:string"/>

complexType mskFileType

extension of xs:string

Name	Type	Use	Default	Fixed	Annotation
type	xs:string	required		map
format	xs:string	required		CCP4
sizeKb	xs:string	required

source

<xs:complexType name="mskFileType">
  <xs:simpleContent>
    <xs:extension base="xs:string">
      <xs:attribute name="type" type="xs:string" use="required" fixed="map"/>
      <xs:attribute name="format" type="xs:string" use="required" fixed="CCP4"/>
      <xs:attribute name="sizeKb" type="xs:string" use="required"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType mskSetType

<xs:complexType name="mskSetType">
  <xs:sequence>
    <xs:element name="mask" type="emd:mskType" minOccurs="0" maxOccurs="unbounded"/>
  </xs:sequence>
</xs:complexType>

element mskSetType/mask

diagram
namespace	EMDSchema
type	mskType
children	file dataType dimensions spacing origin limit cell axisOrder statistics pixelSpacing details annotationDetails spaceGroupNumber
source	<xs:element name="mask" type="emd:mskType" minOccurs="0" maxOccurs="unbounded"/>

file dataType dimensions spacing origin limit cell axisOrder statistics pixelSpacing details annotationDetails spaceGroupNumber

<xs:complexType name="mskType">
  <xs:all>
    <xs:element name="file" type="emd:mskFileType"/>
    <xs:element name="dataType" type="emd:mapDataType"/>
    <xs:element name="dimensions" type="emd:dimensionType"/>
    <xs:element name="spacing" type="emd:spacingType"/>
    <xs:element name="origin" type="emd:originType"/>
    <xs:element name="limit" type="emd:limitType"/>
    <xs:element name="cell" type="emd:cellType"/>
    <xs:element name="axisOrder" type="emd:axisOrderType"/>
    <xs:element name="statistics" type="emd:statisticsType" minOccurs="0"/>
    <xs:element name="pixelSpacing" type="emd:pixelSpacingType"/>
    <xs:element name="details" type="xs:string"/>
    <xs:element name="annotationDetails" type="xs:string"/>
    <xs:element name="spaceGroupNumber" type="xs:string"/>
  </xs:all>
</xs:complexType>

Name	Type	Use	Default	Fixed	Annotation
type	xs:string	required		map
format	xs:string	required		CCP4
sizeKb	xs:string	required

source

<xs:element name="file" type="emd:mskFileType"/>

element mskType/dataType

enumeration	signed byte
enumeration	int
enumeration	float (32-bit)
enumeration	integer (16-bit)

source

<xs:element name="dataType" type="emd:mapDataType"/>

element mskType/dimensions

diagram
namespace	EMDSchema
type	dimensionType
children	numRows numColumns numSections
source	<xs:element name="dimensions" type="emd:dimensionType"/>

element mskType/spacing

diagram
namespace	EMDSchema
type	spacingType
children	spacingRow spacingCol spacingSec
source	<xs:element name="spacing" type="emd:spacingType"/>

element mskType/origin

diagram
namespace	EMDSchema
type	originType
children	originRow originCol originSec
source	<xs:element name="origin" type="emd:originType"/>

element mskType/limit

diagram
namespace	EMDSchema
type	limitType
children	limitRow limitCol limitSec
source	<xs:element name="limit" type="emd:limitType"/>

element mskType/cell

diagram
namespace	EMDSchema
type	cellType
children	cellA cellB cellC cellAlpha cellBeta cellGamma
source	<xs:element name="cell" type="emd:cellType"/>

element mskType/axisOrder

diagram
namespace	EMDSchema
type	axisOrderType
children	axisOrderFast axisOrderMedium axisOrderSlow
source	<xs:element name="axisOrder" type="emd:axisOrderType"/>

element mskType/statistics

diagram
namespace	EMDSchema
type	statisticsType
children	minimum maximum average std
source	<xs:element name="statistics" type="emd:statisticsType" minOccurs="0"/>

element mskType/pixelSpacing

diagram
namespace	EMDSchema
type	pixelSpacingType
children	pixelX pixelY pixelZ
source	<xs:element name="pixelSpacing" type="emd:pixelSpacingType"/>

element mskType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string"/>

element mskType/annotationDetails

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="annotationDetails" type="xs:string"/>

element mskType/spaceGroupNumber

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="spaceGroupNumber" type="xs:string"/>

extension of xs:decimal

used by

elements

samplType/molWtExp smplCompType/molWtExp samplType/molWtTheo smplCompType/molWtTheo

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		MDa

source

<xs:complexType name="mwType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="MDa"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType natSrcType

cell organ tissue cellLocation

used by

elements

proteinType/natSource cellCompType/natSource ligandType/natSource

source

<xs:complexType name="natSrcType">
  <xs:all>
    <xs:element name="cell" type="xs:string" minOccurs="0"/>
    <xs:element name="organ" type="xs:string" minOccurs="0"/>
    <xs:element name="tissue" type="xs:string" minOccurs="0"/>
    <xs:element name="cellLocation" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element natSrcType/cell

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="cell" type="xs:string" minOccurs="0"/>

element natSrcType/organ

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="organ" type="xs:string" minOccurs="0"/>

element natSrcType/tissue

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="tissue" type="xs:string" minOccurs="0"/>

element natSrcType/cellLocation

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="cellLocation" type="xs:string" minOccurs="0"/>

complexType nuclAcidType

sciSpeciesName synSpeciesName mutantFlag sequence class structure

used by

element

smplCompType/nucleic-acid

source

<xs:complexType name="nuclAcidType">
  <xs:all>
    <xs:element name="sciSpeciesName" type="xs:string" minOccurs="0"/>
    <xs:element name="synSpeciesName" type="xs:string" minOccurs="0"/>
    <xs:element name="mutantFlag" type="xs:boolean"/>
    <xs:element name="sequence" type="xs:string" minOccurs="0"/>
    <xs:element name="class" type="emd:naClassType"/>
    <xs:element name="structure" type="emd:naStructType"/>
  </xs:all>
</xs:complexType>

element nuclAcidType/sciSpeciesName

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="sciSpeciesName" type="xs:string" minOccurs="0"/>

element nuclAcidType/synSpeciesName

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="synSpeciesName" type="xs:string" minOccurs="0"/>

element nuclAcidType/mutantFlag

diagram
namespace	EMDSchema
type	xs:boolean
source	<xs:element name="mutantFlag" type="xs:boolean"/>

element nuclAcidType/sequence

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="sequence" type="xs:string" minOccurs="0"/>

element nuclAcidType/class

enumeration	DNA
enumeration	DNA/RNA
enumeration	PEPTIDE NUCLEIC ACID
enumeration	PEPTIDE NUCLEIC ACID/DNA
enumeration	RIBOZYME
enumeration	RNA
enumeration	T-RNA
enumeration	OTHER

source

<xs:element name="class" type="emd:naClassType"/>

element nuclAcidType/structure

enumeration	SINGLE STRANDED
enumeration	DOUBLE HELIX
enumeration	TRIPLE HELIX
enumeration	QUADRUPLE HELIX
enumeration	OTHER

source

<xs:element name="structure" type="emd:naStructType"/>

complexType originType

originRow originCol originSec

used by

elements

mapType/origin mskType/origin slcType/origin

source

<xs:complexType name="originType">
  <xs:all>
    <xs:element name="originRow" type="emd:origType"/>
    <xs:element name="originCol" type="emd:origType"/>
    <xs:element name="originSec" type="emd:origType"/>
  </xs:all>
</xs:complexType>

element originType/originRow

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="originRow" type="emd:origType"/>

element originType/originCol

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="originCol" type="emd:origType"/>

element originType/originSec

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="originSec" type="emd:origType"/>

extension of xs:decimal

used by

elements

originType/originCol originType/originRow originType/originSec

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:complexType name="origType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="A"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType pixelSpacingType

mapType/pixelSpacing mskType/pixelSpacing slcType/pixelSpacing

source

<xs:complexType name="pixelSpacingType">
  <xs:all>
    <xs:element name="pixelX" type="emd:pixType"/>
    <xs:element name="pixelY" type="emd:pixType"/>
    <xs:element name="pixelZ" type="emd:pixType"/>
  </xs:all>
</xs:complexType>

element pixelSpacingType/pixelX

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="pixelX" type="emd:pixType"/>

element pixelSpacingType/pixelY

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="pixelY" type="emd:pixType"/>

element pixelSpacingType/pixelZ

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="pixelZ" type="emd:pixType"/>

extension of xs:decimal

used by

elements

pixelSpacingType/pixelX pixelSpacingType/pixelY pixelSpacingType/pixelZ

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:complexType name="pixType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="A"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType processType

reconstruction emDataSet

         Contains information on
        the digital processing of image data

source

<xs:complexType name="processType">
  <xs:annotation>
    <xs:documentation xml:lang="en">         Contains information on
        the digital processing of image data       </xs:documentation>
  </xs:annotation>
  <xs:sequence>
    <xs:element name="reconstruction" type="emd:reconsType" maxOccurs="unbounded"/>
    <xs:element name="emDataSet" type="emd:emDsType"/>
  </xs:sequence>
</xs:complexType>

element processType/reconstruction

diagram
namespace	EMDSchema
type	reconsType
children	algorithm software ctfCorrection resolutionByAuthor resolutionMethod details eulerAnglesDetails
source	<xs:element name="reconstruction" type="emd:reconsType" maxOccurs="unbounded"/>

element processType/emDataSet

diagram
namespace	EMDSchema
type	emDsType
children	twoDCrystal icosahedral helical singleParticle individualStructure
source	<xs:element name="emDataSet" type="emd:emDsType"/>

complexType proteinType

sciSpeciesName synSpeciesName oligomericDetails numCopies mutantFlag refInterpro refGo natSource engSource strain details

<xs:complexType name="proteinType">
  <xs:all>
    <xs:element name="sciSpeciesName" type="xs:string" minOccurs="0"/>
    <xs:element name="synSpeciesName" type="xs:string" minOccurs="0"/>
    <xs:element name="oligomericDetails" type="xs:string" minOccurs="0"/>
    <xs:element name="numCopies" type="xs:string" minOccurs="0"/>
    <xs:element name="mutantFlag" type="xs:boolean"/>
    <xs:element name="refInterpro" type="emd:iprIdType" minOccurs="0"/>
    <xs:element name="refGo" type="emd:goIdType" minOccurs="0"/>
    <xs:element name="natSource" type="emd:natSrcType" minOccurs="0"/>
    <xs:element name="engSource" type="emd:engSrcType" minOccurs="0"/>
    <xs:element name="strain" type="xs:string" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element proteinType/sciSpeciesName

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="sciSpeciesName" type="xs:string" minOccurs="0"/>

element proteinType/synSpeciesName

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="synSpeciesName" type="xs:string" minOccurs="0"/>

element proteinType/oligomericDetails

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="oligomericDetails" type="xs:string" minOccurs="0"/>

element proteinType/numCopies

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="numCopies" type="xs:string" minOccurs="0"/>

element proteinType/mutantFlag

diagram
namespace	EMDSchema
type	xs:boolean
source	<xs:element name="mutantFlag" type="xs:boolean"/>

element proteinType/refInterpro

<xs:element name="refInterpro" type="emd:iprIdType" minOccurs="0"/>

element proteinType/refGo

<xs:element name="refGo" type="emd:goIdType" minOccurs="0"/>

element proteinType/natSource

diagram
namespace	EMDSchema
type	natSrcType
children	cell organ tissue cellLocation
source	<xs:element name="natSource" type="emd:natSrcType" minOccurs="0"/>

element proteinType/engSource

diagram
namespace	EMDSchema
type	engSrcType
children	expSystem vector
source	<xs:element name="engSource" type="emd:engSrcType" minOccurs="0"/>

element proteinType/strain

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="strain" type="xs:string" minOccurs="0"/>

element proteinType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType prRefType

depType/primaryReference

attributes

Name	Type	Use	Default	Fixed	Annotation
published	xs:boolean	required

source

<xs:complexType name="prRefType">
  <xs:complexContent>
    <xs:extension base="emd:pubType">
      <xs:attribute name="published" type="xs:boolean" use="required"/>
    </xs:extension>
  </xs:complexContent>
</xs:complexType>

<xs:complexType name="pubType">
  <xs:choice>
    <xs:element name="journalArticle" type="emd:jrnlArtType"/>
  </xs:choice>
</xs:complexType>

element pubType/journalArticle

diagram
namespace	EMDSchema
type	jrnlArtType
children	year journal volume firstPage lastPage articleTitle authors
source	<xs:element name="journalArticle" type="emd:jrnlArtType"/>

complexType reconsType

algorithm software ctfCorrection resolutionByAuthor resolutionMethod details eulerAnglesDetails

used by

element

processType/reconstruction

source

<xs:complexType name="reconsType">
  <xs:all>
    <xs:element name="algorithm" type="xs:string" minOccurs="0"/>
    <xs:element name="software" type="xs:string" minOccurs="0"/>
    <xs:element name="ctfCorrection" type="xs:string" minOccurs="0"/>
    <xs:element name="resolutionByAuthor" type="xs:string" minOccurs="0"/>
    <xs:element name="resolutionMethod" type="xs:string" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
    <xs:element name="eulerAnglesDetails" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element reconsType/algorithm

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="algorithm" type="xs:string" minOccurs="0"/>

element reconsType/software

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="software" type="xs:string" minOccurs="0"/>

element reconsType/ctfCorrection

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="ctfCorrection" type="xs:string" minOccurs="0"/>

element reconsType/resolutionByAuthor

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="resolutionByAuthor" type="xs:string" minOccurs="0"/>

element reconsType/resolutionMethod

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="resolutionMethod" type="xs:string" minOccurs="0"/>

element reconsType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

element reconsType/eulerAnglesDetails

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="eulerAnglesDetails" type="xs:string" minOccurs="0"/>

complexType riboTypeChi

prokaryote eukaryote details

used by

element

smplCompType/ribosome-chimera

source

<xs:complexType name="riboTypeChi">
  <xs:sequence>
    <xs:element name="prokaryote" type="xs:string" maxOccurs="unbounded"/>
    <xs:element name="eukaryote" type="xs:string" maxOccurs="unbounded"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:sequence>
</xs:complexType>

element riboTypeChi/prokaryote

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="prokaryote" type="xs:string" maxOccurs="unbounded"/>

element riboTypeChi/eukaryote

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="eukaryote" type="xs:string" maxOccurs="unbounded"/>

element riboTypeChi/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType riboTypeEu

smplCompType/ribosome-eukaryote

source

<xs:complexType name="riboTypeEu">
  <xs:sequence>
    <xs:element name="eukaryote" type="xs:string" maxOccurs="unbounded"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:sequence>
</xs:complexType>

element riboTypeEu/eukaryote

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="eukaryote" type="xs:string" maxOccurs="unbounded"/>

element riboTypeEu/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType riboTypePro

smplCompType/ribosome-prokaryote

source

<xs:complexType name="riboTypePro">
  <xs:sequence>
    <xs:element name="prokaryote" type="xs:string" maxOccurs="unbounded"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:sequence>
</xs:complexType>

element riboTypePro/prokaryote

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="prokaryote" type="xs:string" maxOccurs="unbounded"/>

element riboTypePro/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType samplConcType

extension of xs:decimal

used by

element

bufferType/sampleConc

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		mg/ml

source

<xs:complexType name="samplConcType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="mg/ml"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType samplSizeType

extension of xs:decimal

used by

element

imgScanType/samplingSize

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		microns

source

<xs:complexType name="samplSizeType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="microns"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType samplType

name aggregationState compDegree molWtTheo molWtExp molWtMethod details numComponents sampleComponentList

         Describes the nature of
        the biological sample studied, corresponding to the 3D-EM map

source

<xs:complexType name="samplType">
  <xs:annotation>
    <xs:documentation xml:lang="en">         Describes the nature of
        the biological sample studied, corresponding to the 3D-EM map       </xs:documentation>
  </xs:annotation>
  <xs:all>
    <xs:element name="name" type="xs:string"/>
    <xs:element name="aggregationState" type="emd:aggrType"/>
    <xs:element name="compDegree" type="xs:string" minOccurs="0"/>
    <xs:element name="molWtTheo" type="emd:mwType" minOccurs="0"/>
    <xs:element name="molWtExp" type="emd:mwType" minOccurs="0"/>
    <xs:element name="molWtMethod" type="xs:string" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
    <xs:element name="numComponents" type="xs:positiveInteger"/>
    <xs:element name="sampleComponentList" type="emd:smplCompListType"/>
  </xs:all>
</xs:complexType>

element samplType/name

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="name" type="xs:string"/>

element samplType/aggregationState

enumeration	twoDCrystal
enumeration	singleParticle
enumeration	individualStructure
enumeration	icosahedral
enumeration	helical

source

<xs:element name="aggregationState" type="emd:aggrType"/>

element samplType/compDegree

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="compDegree" type="xs:string" minOccurs="0"/>

element samplType/molWtTheo

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		MDa

source

<xs:element name="molWtTheo" type="emd:mwType" minOccurs="0"/>

element samplType/molWtExp

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		MDa

source

<xs:element name="molWtExp" type="emd:mwType" minOccurs="0"/>

element samplType/molWtMethod

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="molWtMethod" type="xs:string" minOccurs="0"/>

element samplType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

element samplType/numComponents

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="numComponents" type="xs:positiveInteger"/>

element samplType/sampleComponentList

diagram
namespace	EMDSchema
type	smplCompListType
children	sampleComponent
source	<xs:element name="sampleComponentList" type="emd:smplCompListType"/>

complexType singPartType

numProjections numClassAverages details

used by

element

emDsType/singleParticle

source

<xs:complexType name="singPartType">
  <xs:all>
    <xs:element name="numProjections" type="xs:positiveInteger" minOccurs="0"/>
    <xs:element name="numClassAverages" type="xs:positiveInteger" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element singPartType/numProjections

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="numProjections" type="xs:positiveInteger" minOccurs="0"/>

element singPartType/numClassAverages

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="numClassAverages" type="xs:positiveInteger" minOccurs="0"/>

element singPartType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType slcFileType

extension of xs:string

Name	Type	Use	Default	Fixed	Annotation
type	xs:string	required		map
format	xs:string	required		CCP4
sizeKb	xs:string	required

source

<xs:complexType name="slcFileType">
  <xs:simpleContent>
    <xs:extension base="xs:string">
      <xs:attribute name="type" type="xs:string" use="required" fixed="map"/>
      <xs:attribute name="format" type="xs:string" use="required" fixed="CCP4"/>
      <xs:attribute name="sizeKb" type="xs:string" use="required"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType slcSetType

<xs:complexType name="slcSetType">
  <xs:sequence>
    <xs:element name="slice" type="emd:slcType" minOccurs="0" maxOccurs="unbounded"/>
  </xs:sequence>
</xs:complexType>

element slcSetType/slice

diagram
namespace	EMDSchema
type	slcType
children	file dataType dimensions spacing origin limit cell axisOrder statistics pixelSpacing details annotationDetails spaceGroupNumber
source	<xs:element name="slice" type="emd:slcType" minOccurs="0" maxOccurs="unbounded"/>

file dataType dimensions spacing origin limit cell axisOrder statistics pixelSpacing details annotationDetails spaceGroupNumber

<xs:complexType name="slcType">
  <xs:all>
    <xs:element name="file" type="emd:slcFileType"/>
    <xs:element name="dataType" type="emd:mapDataType"/>
    <xs:element name="dimensions" type="emd:dimensionType"/>
    <xs:element name="spacing" type="emd:spacingType"/>
    <xs:element name="origin" type="emd:originType"/>
    <xs:element name="limit" type="emd:limitType"/>
    <xs:element name="cell" type="emd:cellType"/>
    <xs:element name="axisOrder" type="emd:axisOrderType"/>
    <xs:element name="statistics" type="emd:statisticsType"/>
    <xs:element name="pixelSpacing" type="emd:pixelSpacingType"/>
    <xs:element name="details" type="xs:string"/>
    <xs:element name="annotationDetails" type="xs:string"/>
    <xs:element name="spaceGroupNumber" type="xs:string"/>
  </xs:all>
</xs:complexType>

Name	Type	Use	Default	Fixed	Annotation
type	xs:string	required		map
format	xs:string	required		CCP4
sizeKb	xs:string	required

source

<xs:element name="file" type="emd:slcFileType"/>

element slcType/dataType

enumeration	signed byte
enumeration	int
enumeration	float (32-bit)
enumeration	integer (16-bit)

source

<xs:element name="dataType" type="emd:mapDataType"/>

element slcType/dimensions

diagram
namespace	EMDSchema
type	dimensionType
children	numRows numColumns numSections
source	<xs:element name="dimensions" type="emd:dimensionType"/>

element slcType/spacing

diagram
namespace	EMDSchema
type	spacingType
children	spacingRow spacingCol spacingSec
source	<xs:element name="spacing" type="emd:spacingType"/>

element slcType/origin

diagram
namespace	EMDSchema
type	originType
children	originRow originCol originSec
source	<xs:element name="origin" type="emd:originType"/>

element slcType/limit

diagram
namespace	EMDSchema
type	limitType
children	limitRow limitCol limitSec
source	<xs:element name="limit" type="emd:limitType"/>

element slcType/cell

diagram
namespace	EMDSchema
type	cellType
children	cellA cellB cellC cellAlpha cellBeta cellGamma
source	<xs:element name="cell" type="emd:cellType"/>

element slcType/axisOrder

diagram
namespace	EMDSchema
type	axisOrderType
children	axisOrderFast axisOrderMedium axisOrderSlow
source	<xs:element name="axisOrder" type="emd:axisOrderType"/>

element slcType/statistics

diagram
namespace	EMDSchema
type	statisticsType
children	minimum maximum average std
source	<xs:element name="statistics" type="emd:statisticsType"/>

element slcType/pixelSpacing

diagram
namespace	EMDSchema
type	pixelSpacingType
children	pixelX pixelY pixelZ
source	<xs:element name="pixelSpacing" type="emd:pixelSpacingType"/>

element slcType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string"/>

element slcType/annotationDetails

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="annotationDetails" type="xs:string"/>

element slcType/spaceGroupNumber

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="spaceGroupNumber" type="xs:string"/>

complexType smplCompListType

samplType/sampleComponentList

source

<xs:complexType name="smplCompListType">
  <xs:sequence>
    <xs:element name="sampleComponent" type="emd:smplCompType" maxOccurs="unbounded"/>
  </xs:sequence>
</xs:complexType>

element smplCompListType/sampleComponent

entry sciName synName molWtTheo molWtExp details protein cellular-component virus nucleic-acid ligand label ribosome-eukaryote ribosome-prokaryote ribosome-chimera

attributes

Name	Type	Use	Default	Fixed	Annotation
componentID	xs:positiveInteger	required

source

<xs:element name="sampleComponent" type="emd:smplCompType" maxOccurs="unbounded"/>

complexType smplCompType

entry sciName synName molWtTheo molWtExp details protein cellular-component virus nucleic-acid ligand label ribosome-eukaryote ribosome-prokaryote ribosome-chimera

used by

element

smplCompListType/sampleComponent

attributes

Name	Type	Use	Default	Fixed	Annotation
componentID	xs:positiveInteger	required

source

<xs:complexType name="smplCompType">
  <xs:sequence>
    <xs:element name="entry" type="emd:cmpntClassType"/>
    <xs:element name="sciName" type="xs:string"/>
    <xs:element name="synName" type="xs:string" minOccurs="0"/>
    <xs:element name="molWtTheo" type="emd:mwType" minOccurs="0"/>
    <xs:element name="molWtExp" type="emd:mwType" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
    <xs:choice>
      <xs:element name="protein" type="emd:proteinType"/>
      <xs:element name="cellular-component" type="emd:cellCompType"/>
      <xs:element name="virus" type="emd:virusType"/>
      <xs:element name="nucleic-acid" type="emd:nuclAcidType"/>
      <xs:element name="ligand" type="emd:ligandType"/>
      <xs:element name="label" type="emd:labelType"/>
      <xs:element name="ribosome-eukaryote" type="emd:riboTypeEu"/>
      <xs:element name="ribosome-prokaryote" type="emd:riboTypePro"/>
      <xs:element name="ribosome-chimera" type="emd:riboTypeChi"/>
    </xs:choice>
  </xs:sequence>
  <xs:attribute name="componentID" type="xs:positiveInteger" use="required"/>
</xs:complexType>

element smplCompType/entry

enumeration	virus
enumeration	cellular-component
enumeration	protein
enumeration	nucleic-acid
enumeration	ligand
enumeration	label
enumeration	ribosome-eukaryote
enumeration	ribosome-prokaryote
enumeration	ribosome-chimera

source

<xs:element name="entry" type="emd:cmpntClassType"/>

element smplCompType/sciName

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="sciName" type="xs:string"/>

element smplCompType/synName

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="synName" type="xs:string" minOccurs="0"/>

element smplCompType/molWtTheo

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		MDa

source

<xs:element name="molWtTheo" type="emd:mwType" minOccurs="0"/>

element smplCompType/molWtExp

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		MDa

source

<xs:element name="molWtExp" type="emd:mwType" minOccurs="0"/>

element smplCompType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

element smplCompType/protein

diagram
namespace	EMDSchema
type	proteinType
children	sciSpeciesName synSpeciesName oligomericDetails numCopies mutantFlag refInterpro refGo natSource engSource strain details
source	<xs:element name="protein" type="emd:proteinType"/>

element smplCompType/cellular-component

diagram
namespace	EMDSchema
type	cellCompType
children	sciSpeciesName synSpeciesName oligomericDetails numCopies mutantFlag refInterpro refGo natSource engSource strain details
source	<xs:element name="cellular-component" type="emd:cellCompType"/>

element smplCompType/virus

diagram
namespace	EMDSchema
type	virusType
children	hostSpecies hostCategory class isolate empty enveloped refIctvdb nameElementOne diameterOne tNumberOne nameElementTwo diameterTwo tNumberTwo nameElementThree diameterThree tNumberThree
source	<xs:element name="virus" type="emd:virusType"/>

element smplCompType/nucleic-acid

diagram
namespace	EMDSchema
type	nuclAcidType
children	sciSpeciesName synSpeciesName mutantFlag sequence class structure
source	<xs:element name="nucleic-acid" type="emd:nuclAcidType"/>

element smplCompType/ligand

diagram
namespace	EMDSchema
type	ligandType
children	sciSpeciesName synSpeciesName oligomericDetails numCopies mutantFlag refInterpro refGo natSource engSource strain details
source	<xs:element name="ligand" type="emd:ligandType"/>

element smplCompType/label

diagram
namespace	EMDSchema
type	labelType
children	formula oligomericDetails numCopies
source	<xs:element name="label" type="emd:labelType"/>

element smplCompType/ribosome-eukaryote

diagram
namespace	EMDSchema
type	riboTypeEu
children	eukaryote details
source	<xs:element name="ribosome-eukaryote" type="emd:riboTypeEu"/>

element smplCompType/ribosome-prokaryote

diagram
namespace	EMDSchema
type	riboTypePro
children	prokaryote details
source	<xs:element name="ribosome-prokaryote" type="emd:riboTypePro"/>

element smplCompType/ribosome-chimera

diagram
namespace	EMDSchema
type	riboTypeChi
children	prokaryote eukaryote details
source	<xs:element name="ribosome-chimera" type="emd:riboTypeChi"/>

complexType smplPrepType

buffer staining sampleSupportDetails

used by

element

expType/samplePreparation

source

<xs:complexType name="smplPrepType">
  <xs:all>
    <xs:element name="buffer" type="emd:bufferType" minOccurs="0"/>
    <xs:element name="staining" type="xs:string" minOccurs="0"/>
    <xs:element name="sampleSupportDetails" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element smplPrepType/buffer

diagram
namespace	EMDSchema
type	bufferType
children	ph sampleConc details
source	<xs:element name="buffer" type="emd:bufferType" minOccurs="0"/>

element smplPrepType/staining

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="staining" type="xs:string" minOccurs="0"/>

element smplPrepType/sampleSupportDetails

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="sampleSupportDetails" type="xs:string" minOccurs="0"/>

complexType spacingType

spacingRow spacingCol spacingSec

used by

elements

mapType/spacing mskType/spacing slcType/spacing

source

<xs:complexType name="spacingType">
  <xs:all>
    <xs:element name="spacingRow" type="emd:lengthType"/>
    <xs:element name="spacingCol" type="emd:lengthType"/>
    <xs:element name="spacingSec" type="emd:lengthType"/>
  </xs:all>
</xs:complexType>

element spacingType/spacingRow

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="spacingRow" type="emd:lengthType"/>

element spacingType/spacingCol

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="spacingCol" type="emd:lengthType"/>

element spacingType/spacingSec

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="spacingSec" type="emd:lengthType"/>

complexType statisticsType

minimum maximum average std

used by

elements

mapType/statistics mskType/statistics slcType/statistics

source

<xs:complexType name="statisticsType">
  <xs:all>
    <xs:element name="minimum" type="xs:decimal"/>
    <xs:element name="maximum" type="xs:decimal"/>
    <xs:element name="average" type="xs:decimal"/>
    <xs:element name="std" type="xs:decimal"/>
  </xs:all>
</xs:complexType>

element statisticsType/minimum

diagram
namespace	EMDSchema
type	xs:decimal
source	<xs:element name="minimum" type="xs:decimal"/>

element statisticsType/maximum

diagram
namespace	EMDSchema
type	xs:decimal
source	<xs:element name="maximum" type="xs:decimal"/>

element statisticsType/average

diagram
namespace	EMDSchema
type	xs:decimal
source	<xs:element name="average" type="xs:decimal"/>

element statisticsType/std

diagram
namespace	EMDSchema
type	xs:decimal
source	<xs:element name="std" type="xs:decimal"/>

complexType structFactType

xtal2DType/structureFactor

source

<xs:complexType name="structFactType">
  <xs:all>
    <xs:element name="file" type="xs:string"/>
    <xs:element name="details" type="xs:string"/>
  </xs:all>
</xs:complexType>

element structFactType/file

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="file" type="xs:string"/>

element structFactType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string"/>

complexType supplType

figureSet fscSet maskSet sliceSet

 Contains information on
        supplemental data items and material to the 3D-EM map

source

<xs:complexType name="supplType">
  <xs:annotation>
    <xs:documentation xml:lang="en"> Contains information on
        supplemental data items and material to the 3D-EM map     </xs:documentation>
  </xs:annotation>
  <xs:all>
    <xs:element name="figureSet" type="emd:figSetType" minOccurs="0"/>
    <xs:element name="fscSet" type="emd:fscSetType" minOccurs="0"/>
    <xs:element name="maskSet" type="emd:mskSetType" minOccurs="0"/>
    <xs:element name="sliceSet" type="emd:slcSetType" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element supplType/figureSet

diagram
namespace	EMDSchema
type	figSetType
children	figure
source	<xs:element name="figureSet" type="emd:figSetType" minOccurs="0"/>

element supplType/fscSet

diagram
namespace	EMDSchema
type	fscSetType
children	fsc
source	<xs:element name="fscSet" type="emd:fscSetType" minOccurs="0"/>

element supplType/maskSet

diagram
namespace	EMDSchema
type	mskSetType
children	mask
source	<xs:element name="maskSet" type="emd:mskSetType" minOccurs="0"/>

element supplType/sliceSet

diagram
namespace	EMDSchema
type	slcSetType
children	slice
source	<xs:element name="sliceSet" type="emd:slcSetType" minOccurs="0"/>

extension of xs:decimal

used by

elements

vitrifType/temperature imgType/temperature imgType/temperatureMax imgType/temperatureMin

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		Kelvin

source

<xs:complexType name="tempType">
  <xs:simpleContent>
    <xs:extension base="xs:decimal">
      <xs:attribute name="units" type="xs:string" use="required" fixed="Kelvin"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

extension of xs:string

used by

elements

imgType/tiltAngleMax imgType/tiltAngleMin

attributes

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:complexType name="tiltType">
  <xs:simpleContent>
    <xs:extension base="xs:string">
      <xs:attribute name="units" type="xs:string" use="required" fixed="degrees"/>
    </xs:extension>
  </xs:simpleContent>
</xs:complexType>

complexType tomogrType

tiltAngleIncrement numSections details

used by

element

emDsType/individualStructure

source

<xs:complexType name="tomogrType">
  <xs:all>
    <xs:element name="tiltAngleIncrement" type="xs:string" minOccurs="0"/>
    <xs:element name="numSections" type="xs:positiveInteger" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element tomogrType/tiltAngleIncrement

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="tiltAngleIncrement" type="xs:string" minOccurs="0"/>

element tomogrType/numSections

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="numSections" type="xs:positiveInteger" minOccurs="0"/>

element tomogrType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType virusType

hostSpecies hostCategory class isolate empty enveloped refIctvdb nameElementOne diameterOne tNumberOne nameElementTwo diameterTwo tNumberTwo nameElementThree diameterThree tNumberThree

<xs:complexType name="virusType">
  <xs:all>
    <xs:element name="hostSpecies" type="xs:string" minOccurs="0"/>
    <xs:element name="hostCategory" type="xs:string"/>
    <xs:element name="class" type="emd:virusClassType"/>
    <xs:element name="isolate" type="emd:virusIsolType"/>
    <xs:element name="empty" type="xs:boolean"/>
    <xs:element name="enveloped" type="xs:boolean"/>
    <xs:element name="refIctvdb" type="emd:ictvIdType" minOccurs="0"/>
    <xs:element name="nameElementOne" type="xs:string" minOccurs="0"/>
    <xs:element name="diameterOne" type="emd:diamType" minOccurs="0"/>
    <xs:element name="tNumberOne" type="xs:positiveInteger" minOccurs="0"/>
    <xs:element name="nameElementTwo" type="xs:string" minOccurs="0"/>
    <xs:element name="diameterTwo" type="emd:diamType" minOccurs="0"/>
    <xs:element name="tNumberTwo" type="xs:positiveInteger" minOccurs="0"/>
    <xs:element name="nameElementThree" type="xs:string" minOccurs="0"/>
    <xs:element name="diameterThree" type="emd:diamType" minOccurs="0"/>
    <xs:element name="tNumberThree" type="xs:positiveInteger" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element virusType/hostSpecies

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="hostSpecies" type="xs:string" minOccurs="0"/>

element virusType/hostCategory

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="hostCategory" type="xs:string"/>

element virusType/class

enumeration	VIRION
enumeration	SATELLITE
enumeration	PRION
enumeration	VIROID
enumeration	VIRUS-LIKE PARTICLE
enumeration	OTHER

source

<xs:element name="class" type="emd:virusClassType"/>

element virusType/isolate

enumeration	STRAIN
enumeration	SEROTYPE
enumeration	SEROCOMPLEX
enumeration	SUBSPECIES
enumeration	SPECIES
enumeration	OTHER

source

<xs:element name="isolate" type="emd:virusIsolType"/>

element virusType/empty

diagram
namespace	EMDSchema
type	xs:boolean
source	<xs:element name="empty" type="xs:boolean"/>

element virusType/enveloped

diagram
namespace	EMDSchema
type	xs:boolean
source	<xs:element name="enveloped" type="xs:boolean"/>

element virusType/refIctvdb

diagram
namespace	EMDSchema
type	ictvIdType
source	<xs:element name="refIctvdb" type="emd:ictvIdType" minOccurs="0"/>

element virusType/nameElementOne

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="nameElementOne" type="xs:string" minOccurs="0"/>

element virusType/diameterOne

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="diameterOne" type="emd:diamType" minOccurs="0"/>

element virusType/tNumberOne

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="tNumberOne" type="xs:positiveInteger" minOccurs="0"/>

element virusType/nameElementTwo

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="nameElementTwo" type="xs:string" minOccurs="0"/>

element virusType/diameterTwo

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="diameterTwo" type="emd:diamType" minOccurs="0"/>

element virusType/tNumberTwo

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="tNumberTwo" type="xs:positiveInteger" minOccurs="0"/>

element virusType/nameElementThree

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="nameElementThree" type="xs:string" minOccurs="0"/>

element virusType/diameterThree

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="diameterThree" type="emd:diamType" minOccurs="0"/>

element virusType/tNumberThree

diagram
namespace	EMDSchema
type	xs:positiveInteger
source	<xs:element name="tNumberThree" type="xs:positiveInteger" minOccurs="0"/>

complexType vitrifType

cryogenName humidity temperature instrument method timeResolvedState details

used by

element

expType/vitrification

source

<xs:complexType name="vitrifType">
  <xs:sequence>
    <xs:element name="cryogenName" type="xs:string"/>
    <xs:element name="humidity" type="xs:string" minOccurs="0"/>
    <xs:element name="temperature" type="emd:tempType" minOccurs="0"/>
    <xs:element name="instrument" type="xs:string" minOccurs="0"/>
    <xs:element name="method" type="xs:string" minOccurs="0"/>
    <xs:element name="timeResolvedState" type="xs:string" minOccurs="0"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
  </xs:sequence>
</xs:complexType>

element vitrifType/cryogenName

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="cryogenName" type="xs:string"/>

element vitrifType/humidity

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="humidity" type="xs:string" minOccurs="0"/>

element vitrifType/temperature

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		Kelvin

source

<xs:element name="temperature" type="emd:tempType" minOccurs="0"/>

element vitrifType/instrument

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="instrument" type="xs:string" minOccurs="0"/>

element vitrifType/method

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="method" type="xs:string" minOccurs="0"/>

element vitrifType/timeResolvedState

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="timeResolvedState" type="xs:string" minOccurs="0"/>

element vitrifType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

complexType xtal2DType

aLength bLength cLength alpha beta gamma planeGroup details crystalGrowDetails structureFactor

<xs:complexType name="xtal2DType">
  <xs:all>
    <xs:element name="aLength" type="emd:lengthType" minOccurs="0"/>
    <xs:element name="bLength" type="emd:lengthType" minOccurs="0"/>
    <xs:element name="cLength" type="emd:lengthType" minOccurs="0"/>
    <xs:element name="alpha" type="emd:anglType" minOccurs="0"/>
    <xs:element name="beta" type="emd:anglType" minOccurs="0"/>
    <xs:element name="gamma" type="emd:anglType" minOccurs="0"/>
    <xs:element name="planeGroup" type="emd:plGrpType"/>
    <xs:element name="details" type="xs:string" minOccurs="0"/>
    <xs:element name="crystalGrowDetails" type="xs:string" minOccurs="0"/>
    <xs:element name="structureFactor" type="emd:structFactType" minOccurs="0"/>
  </xs:all>
</xs:complexType>

element xtal2DType/aLength

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="aLength" type="emd:lengthType" minOccurs="0"/>

element xtal2DType/bLength

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="bLength" type="emd:lengthType" minOccurs="0"/>

element xtal2DType/cLength

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		A

source

<xs:element name="cLength" type="emd:lengthType" minOccurs="0"/>

element xtal2DType/alpha

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:element name="alpha" type="emd:anglType" minOccurs="0"/>

element xtal2DType/beta

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:element name="beta" type="emd:anglType" minOccurs="0"/>

element xtal2DType/gamma

Name	Type	Use	Default	Fixed	Annotation
units	xs:string	required		degrees

source

<xs:element name="gamma" type="emd:anglType" minOccurs="0"/>

element xtal2DType/planeGroup

enumeration	P1
enumeration	P21
enumeration	P12
enumeration	P121
enumeration	C12
enumeration	P222
enumeration	P2221
enumeration	P22121
enumeration	C222
enumeration	P4
enumeration	P422
enumeration	P4212
enumeration	P3
enumeration	P312
enumeration	P321
enumeration	P6
enumeration	P622

source

<xs:element name="planeGroup" type="emd:plGrpType"/>

element xtal2DType/details

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="details" type="xs:string" minOccurs="0"/>

element xtal2DType/crystalGrowDetails

diagram
namespace	EMDSchema
type	xs:string
source	<xs:element name="crystalGrowDetails" type="xs:string" minOccurs="0"/>

element xtal2DType/structureFactor

diagram
namespace	EMDSchema
type	structFactType
children	file details
source	<xs:element name="structureFactor" type="emd:structFactType" minOccurs="0"/>

restriction of xs:string

used by

element

samplType/aggregationState

facets

enumeration	twoDCrystal
enumeration	singleParticle
enumeration	individualStructure
enumeration	icosahedral
enumeration	helical

source

<xs:simpleType name="aggrType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="twoDCrystal"/>
    <xs:enumeration value="singleParticle"/>
    <xs:enumeration value="individualStructure"/>
    <xs:enumeration value="icosahedral"/>
    <xs:enumeration value="helical"/>
  </xs:restriction>
</xs:simpleType>

simpleType cmpntClassType

namespace

EMDSchema

type

restriction of xs:string

enumeration	virus
enumeration	cellular-component
enumeration	protein
enumeration	nucleic-acid
enumeration	ligand
enumeration	label
enumeration	ribosome-eukaryote
enumeration	ribosome-prokaryote
enumeration	ribosome-chimera

source

<xs:simpleType name="cmpntClassType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="virus"/>
    <xs:enumeration value="cellular-component"/>
    <xs:enumeration value="protein"/>
    <xs:enumeration value="nucleic-acid"/>
    <xs:enumeration value="ligand"/>
    <xs:enumeration value="label"/>
    <xs:enumeration value="ribosome-eukaryote"/>
    <xs:enumeration value="ribosome-prokaryote"/>
    <xs:enumeration value="ribosome-chimera"/>
  </xs:restriction>
</xs:simpleType>

simpleType entClassType

namespace

EMDSchema

type

restriction of xs:string

facets

enumeration	molecular entity
enumeration	polypeptide entity

source

<xs:simpleType name="entClassType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="molecular entity"/>
    <xs:enumeration value="polypeptide entity"/>
  </xs:restriction>
</xs:simpleType>

simpleType eSourceType

namespace

EMDSchema

type

restriction of xs:string

used by

element

imgType/electronSource

facets

enumeration	TUNGSTEN HAIRPIN
enumeration	LAB6
enumeration	FIELD EMISSION GUN
enumeration	OTHER

source

<xs:simpleType name="eSourceType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="TUNGSTEN HAIRPIN"/>
    <xs:enumeration value="LAB6"/>
    <xs:enumeration value="FIELD EMISSION GUN"/>
    <xs:enumeration value="OTHER"/>
  </xs:restriction>
</xs:simpleType>

restriction of xs:string

used by

elements

proteinType/refGo cellCompType/refGo ligandType/refGo

<xs:simpleType name="goIdType">
  <xs:restriction base="xs:string">
    <xs:pattern value="GO:\d{7}|n/a"/>
  </xs:restriction>
</xs:simpleType>

simpleType ictvIdType

<xs:simpleType name="ictvIdType">
  <xs:restriction base="xs:string"/>
</xs:simpleType>

restriction of xs:string

used by

element

imgType/illuminationMode

facets

enumeration	OTHER
enumeration	FLOOD BEAM
enumeration	SPOT SCAN

source

<xs:simpleType name="illumType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="OTHER"/>
    <xs:enumeration value="FLOOD BEAM"/>
    <xs:enumeration value="SPOT SCAN"/>
  </xs:restriction>
</xs:simpleType>

simpleType imgFormatType

namespace

EMDSchema

type

restriction of xs:string

facets

enumeration	gif
enumeration	jpeg

source

<xs:simpleType name="imgFormatType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="gif"/>
    <xs:enumeration value="jpeg"/>
  </xs:restriction>
</xs:simpleType>

simpleType imgModeType

namespace

EMDSchema

type

restriction of xs:string

enumeration	BRIGHT FIELD
enumeration	OTHER
enumeration	DARK FIELD
enumeration	DIFFRACTION

source

<xs:simpleType name="imgModeType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="BRIGHT FIELD"/>
    <xs:enumeration value="OTHER"/>
    <xs:enumeration value="DARK FIELD"/>
    <xs:enumeration value="DIFFRACTION"/>
  </xs:restriction>
</xs:simpleType>

restriction of xs:string

used by

elements

proteinType/refInterpro cellCompType/refInterpro ligandType/refInterpro

<xs:simpleType name="iprIdType">
  <xs:restriction base="xs:string">
    <xs:pattern value="IPR:\d{6}|n/a"/>
  </xs:restriction>
</xs:simpleType>

simpleType mapDataType

namespace

EMDSchema

type

restriction of xs:string

used by

elements

mapType/dataType mskType/dataType slcType/dataType

facets

enumeration	signed byte
enumeration	int
enumeration	float (32-bit)
enumeration	integer (16-bit)

source

<xs:simpleType name="mapDataType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="signed byte"/>
    <xs:enumeration value="int"/>
    <xs:enumeration value="float (32-bit)"/>
    <xs:enumeration value="integer (16-bit)"/>
  </xs:restriction>
</xs:simpleType>

simpleType naClassType

namespace

EMDSchema

type

restriction of xs:string

enumeration	DNA
enumeration	DNA/RNA
enumeration	PEPTIDE NUCLEIC ACID
enumeration	PEPTIDE NUCLEIC ACID/DNA
enumeration	RIBOZYME
enumeration	RNA
enumeration	T-RNA
enumeration	OTHER

source

<xs:simpleType name="naClassType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="DNA"/>
    <xs:enumeration value="DNA/RNA"/>
    <xs:enumeration value="PEPTIDE NUCLEIC ACID"/>
    <xs:enumeration value="PEPTIDE NUCLEIC ACID/DNA"/>
    <xs:enumeration value="RIBOZYME"/>
    <xs:enumeration value="RNA"/>
    <xs:enumeration value="T-RNA"/>
    <xs:enumeration value="OTHER"/>
  </xs:restriction>
</xs:simpleType>

simpleType naStructType

namespace

EMDSchema

type

restriction of xs:string

used by

element

nuclAcidType/structure

facets

enumeration	SINGLE STRANDED
enumeration	DOUBLE HELIX
enumeration	TRIPLE HELIX
enumeration	QUADRUPLE HELIX
enumeration	OTHER

source

<xs:simpleType name="naStructType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="SINGLE STRANDED"/>
    <xs:enumeration value="DOUBLE HELIX"/>
    <xs:enumeration value="TRIPLE HELIX"/>
    <xs:enumeration value="QUADRUPLE HELIX"/>
    <xs:enumeration value="OTHER"/>
  </xs:restriction>
</xs:simpleType>

restriction of xs:string

used by

element

xtal2DType/planeGroup

facets

enumeration	P1
enumeration	P21
enumeration	P12
enumeration	P121
enumeration	C12
enumeration	P222
enumeration	P2221
enumeration	P22121
enumeration	C222
enumeration	P4
enumeration	P422
enumeration	P4212
enumeration	P3
enumeration	P312
enumeration	P321
enumeration	P6
enumeration	P622

source

<xs:simpleType name="plGrpType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="P1"/>
    <xs:enumeration value="P21"/>
    <xs:enumeration value="P12"/>
    <xs:enumeration value="P121"/>
    <xs:enumeration value="C12"/>
    <xs:enumeration value="P222"/>
    <xs:enumeration value="P2221"/>
    <xs:enumeration value="P22121"/>
    <xs:enumeration value="C222"/>
    <xs:enumeration value="P4"/>
    <xs:enumeration value="P422"/>
    <xs:enumeration value="P4212"/>
    <xs:enumeration value="P3"/>
    <xs:enumeration value="P312"/>
    <xs:enumeration value="P321"/>
    <xs:enumeration value="P6"/>
    <xs:enumeration value="P622"/>
  </xs:restriction>
</xs:simpleType>

simpleType virusClassType

namespace

EMDSchema

type

restriction of xs:string

enumeration	VIRION
enumeration	SATELLITE
enumeration	PRION
enumeration	VIROID
enumeration	VIRUS-LIKE PARTICLE
enumeration	OTHER

source

<xs:simpleType name="virusClassType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="VIRION"/>
    <xs:enumeration value="SATELLITE"/>
    <xs:enumeration value="PRION"/>
    <xs:enumeration value="VIROID"/>
    <xs:enumeration value="VIRUS-LIKE PARTICLE"/>
    <xs:enumeration value="OTHER"/>
  </xs:restriction>
</xs:simpleType>

simpleType virusIsolType

namespace

EMDSchema

type

restriction of xs:string

enumeration	STRAIN
enumeration	SEROTYPE
enumeration	SEROCOMPLEX
enumeration	SUBSPECIES
enumeration	SPECIES
enumeration	OTHER

source

<xs:simpleType name="virusIsolType">
  <xs:restriction base="xs:string">
    <xs:enumeration value="STRAIN"/>
    <xs:enumeration value="SEROTYPE"/>
    <xs:enumeration value="SEROCOMPLEX"/>
    <xs:enumeration value="SUBSPECIES"/>
    <xs:enumeration value="SPECIES"/>
    <xs:enumeration value="OTHER"/>
  </xs:restriction>
</xs:simpleType>

XML Schema documentation generated with XML Spy Schema Editor www.xmlspy.com